classdef GiftIcaReport<handle
    %GIFTICAREPORT 
    % This Class will be a little tool to print to file images and timecourses
    % to quickly inspect the result of GIFT for a cleanup of fMRI data
    % some guidlines can be found below!
    % https://doi.org/10.1016/j.neuroimage.2016.12.036
    
    properties
        ICA_file    = {};   % .nii file containing the ICA images
        TC_file     = {};   % .nii file containing the TimeCourse data
        Orientation = 'sag';% orientation of images to create
        SliceNumber = [];   % slice numbers to plot
        SPMPath
    end
    
    methods %constructor, set and get functions
        function obj = GiftIcaReport()
            %GIFTICAREPORT Construct an instance of this class
            %   Detailed explanation goes here
            obj.SPMPath=[]; %check if SPM is in the path
        end
        
        function set.SPMPath(obj,~)
            SPMFound=which('spm'); %check if SPM in searchpath
            if isempty(SPMFound) %SPM not found
                id='GiftIcaReport:set_SPMPath:SPM_not_found';
                msg='SPM not found';
                throw(MException(id,msg));               
            end
            %to do add a check on spm version
            obj.SPMPath=fileparts(SPMFound);
        end
        
        function outputArg = method1(obj,inputArg)
            %METHOD1 Summary of this method goes here
            %   Detailed explanation goes here
            outputArg = obj.Property1 + inputArg;
        end
    end
end