20 lines
643 B
Plaintext
20 lines
643 B
Plaintext
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% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/analysis.R
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\name{BronCell.prop}
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\alias{BronCell.prop}
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\title{main function of this package, to calculate cell proportion}
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\usage{
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BronCell.prop(bulk.eset, method = "MuSiC")
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}
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\arguments{
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\item{bulk.eset}{ExpressionSet for bulk data, raw counts as the input}
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\item{method}{Three deconvolution methods are provided: MuSiC, NNLS and bseqsc (based on CIBERSORT), MuSiC is the defual method}
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}
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\value{
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est.prop, A cell proportion matrix, each row represent a sample, each col is a cell type
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}
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\description{
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main function of this package, to calculate cell proportion
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}
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