diff --git a/rnaseq/step2_trim/snippet.sh b/rnaseq/step2_trim/snippet.sh index a65bc51..4a21d2b 100644 --- a/rnaseq/step2_trim/snippet.sh +++ b/rnaseq/step2_trim/snippet.sh @@ -33,7 +33,7 @@ java -jar $EBROOTTRIMMOMATIC/trimmomatic.jar PE \ "${FASTQ_OUT}/sample1_R1_unpaired.fastq.gz" \ "${FASTQ_OUT}/sample1_R2_paired.fastq.gz" \ "${FASTQ_OUT}/sample1_R2_unpaired.fastq.gz" \ - ILLUMINACLIP: TruSeq3-PE.fa:2:30:10 \ + ILLUMINACLIP:TruSeq3-PE.fa:2:30:10 \ LEADING:3 \ TRAILING:3 \ SLIDINGWINDOW:4:25 \