diff --git a/rnaseq/README.md b/rnaseq/README.md new file mode 100644 index 0000000..ccd0fce --- /dev/null +++ b/rnaseq/README.md @@ -0,0 +1,3 @@ +# RNAseq pipeline +Snippets for the RNAseq pipeline: +https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA diff --git a/rnaseq/step1_fastqc/snippet.sh b/rnaseq/step1_fastqc/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step2_trim/snippet.sh b/rnaseq/step2_trim/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step3_align/snippet.sh b/rnaseq/step3_align/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step4_multiqc/snippet.sh b/rnaseq/step4_multiqc/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step5_count/snippet.sh b/rnaseq/step5_count/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step6_overall_QC/snippet.R b/rnaseq/step6_overall_QC/snippet.R new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/umi/snippet.pl b/rnaseq/umi/snippet.pl new file mode 100644 index 0000000..e69de29