From 7ecbc2aee921e6f9440c6481e76d0559218a6a4a Mon Sep 17 00:00:00 2001 From: "Hylke C. Donker" Date: Tue, 9 Feb 2021 11:20:27 +0100 Subject: [PATCH] Template structure. --- rnaseq/README.md | 3 +++ rnaseq/step1_fastqc/snippet.sh | 0 rnaseq/step2_trim/snippet.sh | 0 rnaseq/step3_align/snippet.sh | 0 rnaseq/step4_multiqc/snippet.sh | 0 rnaseq/step5_count/snippet.sh | 0 rnaseq/step6_overall_QC/snippet.R | 0 rnaseq/umi/snippet.pl | 0 8 files changed, 3 insertions(+) create mode 100644 rnaseq/README.md create mode 100644 rnaseq/step1_fastqc/snippet.sh create mode 100644 rnaseq/step2_trim/snippet.sh create mode 100644 rnaseq/step3_align/snippet.sh create mode 100644 rnaseq/step4_multiqc/snippet.sh create mode 100644 rnaseq/step5_count/snippet.sh create mode 100644 rnaseq/step6_overall_QC/snippet.R create mode 100644 rnaseq/umi/snippet.pl diff --git a/rnaseq/README.md b/rnaseq/README.md new file mode 100644 index 0000000..ccd0fce --- /dev/null +++ b/rnaseq/README.md @@ -0,0 +1,3 @@ +# RNAseq pipeline +Snippets for the RNAseq pipeline: +https://docs.google.com/document/d/1lM1wlz950Q8H6Oi7CWW28FO2tGv5nXYtW0wp8vEUizA diff --git a/rnaseq/step1_fastqc/snippet.sh b/rnaseq/step1_fastqc/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step2_trim/snippet.sh b/rnaseq/step2_trim/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step3_align/snippet.sh b/rnaseq/step3_align/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step4_multiqc/snippet.sh b/rnaseq/step4_multiqc/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step5_count/snippet.sh b/rnaseq/step5_count/snippet.sh new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/step6_overall_QC/snippet.R b/rnaseq/step6_overall_QC/snippet.R new file mode 100644 index 0000000..e69de29 diff --git a/rnaseq/umi/snippet.pl b/rnaseq/umi/snippet.pl new file mode 100644 index 0000000..e69de29