From a2bc31351578a289f4bbb3bb19ec2a3dd255af25 Mon Sep 17 00:00:00 2001
From: Marijn Berg <m.berg@rug.nl>
Date: Mon, 22 Feb 2021 14:52:54 +0100
Subject: [PATCH] Simple snippet on running MultiQC to collate FastQC results

---
 rnaseq/step4_multiqc/snippet.sh | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/rnaseq/step4_multiqc/snippet.sh b/rnaseq/step4_multiqc/snippet.sh
index e69de29..e16b342 100644
--- a/rnaseq/step4_multiqc/snippet.sh
+++ b/rnaseq/step4_multiqc/snippet.sh
@@ -0,0 +1,5 @@
+#!/bin/bash
+module load multiqc
+
+# assuming you have all your fastQC result files in the ./fastQCresults folder
+multiqc ./fastQCresults