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P280381 (A.K. Saikumar Jayalatha) P282473 (C. Qi) P271316 (H.C. Donker) P300299 (J.v.N.) P278949 (M. Berg)

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A.K. Saikumar Jayalatha

C. Qi

H.C. Donker

J.v.N.

M. Berg

Comments to umi deduplication script

#8

by T. Karp was merged 2021-02-23 15:24:46 +01:00

master

s3970582:master

1

Made snippet input- and output files more harmonised.

#6

by H.C. Donker was merged 2021-02-23 09:17:17 +01:00

master

feature/harmonised-steps

1

Trimmomatic update (simplified)

#5

by J.v.N. was merged 2021-02-15 17:06:35 +01:00

master

P300299:master

1

WIP: added fastQC code snippet (.pl and .sh scripts)

#4

by R. Bults was closed 2021-02-15 17:07:50 +01:00

master

p287376:master

2

UMI deduplication script from Victor

#3

by T. Karp was merged 2021-02-15 17:44:35 +01:00

master

s3970582:master

2

Small snippet that generates a genome index and aligns the RNAseq reads.

#2

by H.C. Donker was merged 2021-02-15 17:09:32 +01:00

master

step3/star-alignment-snippet

3

FastQC, Trimming, Overall QC (initial)

#1

by J.v.N. was merged 2021-02-15 16:20:22 +01:00

master

P300299:master

3