## Generate Raw Counts using FeatureCounts/HTSeqCounts 

## Load package Subread (packge within which FeatureCounts is present)

+ ml Subread/1.6.4-foss-2015b FeatureCounts

## Features used in FeatureCounts : 
## -s : reversely stranded 
## -T : number of threads used 
## -a : reference genome 
## -o : output file 

+ featureCounts \
+ --a "path to reference genome" \
+ --T 6 \
+ --o "path to output file" \
+ --s 2