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molgenis-ops-docker-helm/molgenis-preview/templates/deployment.yaml

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apiVersion: apps/v1beta2
kind: Deployment
metadata:
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{{- with .Values.ingress.annotations }}
annotations:
{{ toYaml . | indent 4 }}
{{- end }}
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name: {{ template "molgenis.fullname" . }}
labels:
app: {{ template "molgenis.name" . }}
chart: {{ template "molgenis.chart" . }}
release: {{ .Release.Name }}
heritage: {{ .Release.Service }}
spec:
replicas: {{ .Values.replicaCount }}
selector:
matchLabels:
app: {{ template "molgenis.name" . }}
release: {{ .Release.Name }}
template:
metadata:
labels:
app: {{ template "molgenis.name" . }}
release: {{ .Release.Name }}
spec:
containers:
- name: molgenis
{{- with .Values.molgenis }}
image: "{{ .image.repository }}/{{ .image.name }}:{{ .image.tag }}"
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imagePullPolicy: {{ .image.pullPolicy }}
env:
- name: molgenis.home
value: /home/molgenis
- name: opencpu.uri.host
value: localhost
- name: elasticsearch.transport.addresses
value: localhost:9300
- name: elasticsearch.cluster.name
value: {{ $.Values.elasticsearch.clusterName }}
- name: db_uri
value: "jdbc:postgresql://localhost/{{ $.Values.postgres.db }}"
- name: db_user
value: {{ $.Values.postgres.user }}
- name: db_password
value: {{ $.Values.postgres.password }}
- name: admin.password
value: {{ .adminPassword }}
- name: CATALINA_OPTS
value: "{{ .javaOpts }}"
ports:
- containerPort: 8080
# livenessProbe:
# httpGet:
# path: /
# port: 8080
# readinessProbe:
# httpGet:
# path: /api/v2/version
# port: 8080
resources:
{{ toYaml .resources | indent 12 }}
{{- end }}
- name: elasticsearch
{{- with .Values.elasticsearch }}
image: "{{ .image.repository }}:{{ .image.tag }}"
imagePullPolicy: {{ .image.pullPolicy }}
env:
- name: cluster.name
value: {{ .clusterName }}
- name: bootstrap.memory_lock
value: "true"
- name: ES_JAVA_OPTS
value: "{{ .javaOpts }}"
- name: xpack.security.enabled
value: "false"
- name: discovery.type
value: single-node
ports:
- containerPort: 9200
- containerPort: 9300
resources:
{{ toYaml .resources | indent 12 }}
{{- end }}
- name: postgres
{{- with .Values.postgres }}
image: "{{ .image.repository }}:{{ .image.tag }}"
imagePullPolicy: {{ .image.pullPolicy }}
env:
- name: POSTGRES_USER
value: {{ .user }}
- name: POSTGRES_PASSWORD
value: {{ .password }}
- name: POSTGRES_DB
value: {{ .db }}
ports:
- containerPort: 5432
resources:
{{ toYaml .resources | indent 12 }}
{{- end }}
- name: opencpu
{{- with .Values.opencpu }}
image: "{{ .image.repository }}:{{ .image.tag }}"
imagePullPolicy: {{ .image.pullPolicy }}
ports:
- containerPort: 8004
resources:
{{ toYaml .resources | indent 12 }}
{{- end }}
{{- with .Values.nodeSelector }}
nodeSelector:
{{ toYaml . | indent 8 }}
{{- end }}
{{- with .Values.affinity }}
affinity:
{{ toYaml . | indent 8 }}
{{- end }}
{{- with .Values.tolerations }}
tolerations:
{{ toYaml . | indent 8 }}
{{- end }}