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molgenis-ops-docker-helm/molgenis-jenkins/values.yaml

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make molgenis-jenkins depend on subchart
2018-06-27 16:26:49 +02:00
jenkins:
Master:
HostName: jenkins.molgenis.org
ServiceType: ClusterIP
InstallPlugins:
- kubernetes:1.8.4
- workflow-aggregator:2.5
- workflow-job:2.21
- credentials-binding:1.16
- git:3.9.1
Switch to github-branch-source plugin.
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- github-branch-source:2.3.6
- kubernetes-credentials-provider:0.9
feature(github): delegation to github for user management
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- blueocean:1.6.2
- github-oauth:0.29
Security:
UseGitHub: false
GitHub:
ClientID: ""
ClienSecret: ""
make molgenis-jenkins depend on subchart
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Jobs: |-
molgenis: |-
<?xml version='1.1' encoding='UTF-8'?>
Switch to github-branch-source plugin.
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<jenkins.branch.OrganizationFolder plugin="branch-api@2.0.20">
<actions/>
<description></description>
<properties>
<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
<dockerLabel></dockerLabel>
<registry plugin="docker-commons@1.13"/>
</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
<jenkins.branch.NoTriggerOrganizationFolderProperty>
<branches>.*</branches>
</jenkins.branch.NoTriggerOrganizationFolderProperty>
</properties>
<folderViews class="jenkins.branch.OrganizationFolderViewHolder">
<owner reference="../.."/>
</folderViews>
<healthMetrics>
<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
<nonRecursive>false</nonRecursive>
</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
</healthMetrics>
<icon class="jenkins.branch.MetadataActionFolderIcon">
<owner class="jenkins.branch.OrganizationFolder" reference="../.."/>
</icon>
<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
<pruneDeadBranches>true</pruneDeadBranches>
<daysToKeep>-1</daysToKeep>
<numToKeep>-1</numToKeep>
</orphanedItemStrategy>
<triggers>
<com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger plugin="cloudbees-folder@6.5.1">
<spec>H H * * *</spec>
<interval>86400000</interval>
</com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger>
</triggers>
<disabled>false</disabled>
<navigators>
<org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator plugin="github-branch-source@2.3.6">
<repoOwner>molgenis</repoOwner>
<credentialsId>molgenis-jenkins-github-secret</credentialsId>
<traits>
<org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
<strategyId>1</strategyId>
</org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
<org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
<strategyId>1</strategyId>
</org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
<org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
<strategyId>1</strategyId>
<trust class="org.jenkinsci.plugins.github_branch_source.ForkPullRequestDiscoveryTrait$TrustPermission"/>
</org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
</traits>
</org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator>
</navigators>
<projectFactories>
<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory plugin="workflow-multibranch@2.19">
<scriptPath>Jenkinsfile</scriptPath>
</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory>
</projectFactories>
<buildStrategies/>
</jenkins.branch.OrganizationFolder>
Add operations jobs
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molgenis-operations: |-
<?xml version='1.1' encoding='UTF-8'?>
<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19">
<actions/>
<description>HTTPD server that can be used for redirection and proxieing</description>
<displayName>molgenis-ops-docker-httpd</displayName>
<properties>
<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
<dockerLabel></dockerLabel>
<registry plugin="docker-commons@1.13"/>
</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
</properties>
<folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</folderViews>
<healthMetrics>
<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
<nonRecursive>false</nonRecursive>
</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
</healthMetrics>
<icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</icon>
<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
<pruneDeadBranches>true</pruneDeadBranches>
<daysToKeep>-1</daysToKeep>
<numToKeep>-1</numToKeep>
</orphanedItemStrategy>
<triggers/>
<disabled>false</disabled>
<sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20">
<data>
<jenkins.branch.BranchSource>
<source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1">
<id>a756941d-6c9d-4492-bcf9-327041764be6</id>
<remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-httpd.git</remote>
<credentialsId>molgenis-jenkins-github-secret</credentialsId>
<traits>
<jenkins.plugins.git.traits.BranchDiscoveryTrait/>
</traits>
</source>
<strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
<properties class="empty-list"/>
</strategy>
</jenkins.branch.BranchSource>
</data>
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</sources>
<factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
<scriptPath>Jenkinsfile</scriptPath>
</factory>
</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject>
molgenis-ops-docker-maven: |-
<?xml version='1.1' encoding='UTF-8'?>
<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19">
<actions/>
<description></description>
<properties>
<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
<dockerLabel></dockerLabel>
<registry plugin="docker-commons@1.13"/>
</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
</properties>
<folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</folderViews>
<healthMetrics>
<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
<nonRecursive>false</nonRecursive>
</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
</healthMetrics>
<icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</icon>
<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
<pruneDeadBranches>true</pruneDeadBranches>
<daysToKeep>-1</daysToKeep>
<numToKeep>-1</numToKeep>
</orphanedItemStrategy>
<triggers/>
<disabled>false</disabled>
<sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20">
<data>
<jenkins.branch.BranchSource>
<source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1">
<id>4702479a-6988-4a85-b4b7-e77fa2d05ffa</id>
<remote>https://git.webhosting.rug.nl/molgenis/molgenis=ops-docker-maven.git</remote>
<credentialsId></credentialsId>
<traits>
<jenkins.plugins.git.traits.BranchDiscoveryTrait/>
</traits>
</source>
<strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
<properties class="empty-list"/>
</strategy>
</jenkins.branch.BranchSource>
</data>
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
</sources>
<factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory">
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
<scriptPath>Jenkinsfile</scriptPath>
</factory>
</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject>
make molgenis-jenkins depend on subchart
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# Kubernetes secret that contains a 'credentials.xml' for Jenkins
# CredentialsXmlSecret: jenkins-credentials
# Kubernetes secret that contains files to be put in the Jenkins 'secrets' directory,
# useful to manage encryption keys used for credentials.xml for instance (such as
# master.key and hudson.util.Secret)
# SecretsFilesSecret: jenkins-secrets
Add molgenis-maven pod template
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CustomConfigMap: true
make molgenis-jenkins depend on subchart
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rbac:
Add values to configure a second Agent.
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install: true
Fix #8: Make the containers in the jenkins pod template configurable through values
2018-06-29 12:34:52 +02:00
Pods:
rename pod and don't namespace the label
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molgenis:
Label: molgenis
Fix #8: Make the containers in the jenkins pod template configurable through values
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NodeUsageMode: NORMAL
volumes:
- type: HostPath
hostPath: "/var/run/docker.sock"
mountPath: "/var/run/docker.sock"
- type: Secret
secretName: molgenis-pipeline-file-secret
mountPath: "/root/.m2"
Containers:
maven:
Make ports configurable in values
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Image: "registry.webhosting.rug.nl/molgenis/maven"
Fix cat and tty
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Command: cat
enable TTY
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TTY: true
Request resources for the maven container to prevent overly many concurrent builds.
2018-07-02 12:34:37 +02:00
resources:
requests:
cpu: "1"
memory: "4Gi"
Fix #8: Make the containers in the jenkins pod template configurable through values
2018-06-29 12:34:52 +02:00
alpine:
Image: "spotify/alpine"
Fix cat and tty
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Command: cat
enable TTY
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TTY: true
Fix #8: Make the containers in the jenkins pod template configurable through values
2018-06-29 12:34:52 +02:00
EnvVars:
- type: Secret
key: PGP_PASSPHRASE
secretName: molgenis-pipeline-env-secret
secretKey: pgpPassphrase
- type: KeyValue
key: PGP_SECRETKEY
value: "keyfile:/root/.m2/key.asc"
Update values.yaml
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- type: KeyValue
key: npm_config_registry
Fix nexus yarn/npm config.
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value: "http://nexus.molgenis-nexus:8081/repository/npm-central/"
Fix #8: Make the containers in the jenkins pod template configurable through values
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- type: Secret
key: SONAR_TOKEN
secretName: molgenis-pipeline-env-secret
secretKey: sonarToken
- type: Secret
key: CODECOV_TOKEN
secretName: molgenis-pipeline-env-secret
secretKey: codecovToken
- type: Secret
key: GITHUB_TOKEN
secretName: molgenis-pipeline-env-secret
secretKey: githubToken
feature (molgenis-jenkins): Add molgenis-it pod template
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NodeSelector: {}
molgenis-it:
InheritFrom: molgenis
Label: molgenis-it
NodeUsageMode: EXCLUSIVE
Containers:
elasticsearch:
Image: docker.elastic.co/elasticsearch/elasticsearch
ImageTag: 5.5.3
resources:
requests:
cpu: "100m"
memory: "1Gi"
limits:
cpu: "1"
memory: "1500Mi"
EnvVars:
- type: KeyValue
key: ES_JAVA_OPTS
value: "-Xms512m -Xmx512m"
- type: KeyValue
key: cluster.name
value: molgenis
- type: KeyValue
key: bootstrap.memory_lock
value: "true"
- type: KeyValue
key: xpack.security.enabled
value: "false"
- type: KeyValue
key: discovery.type
value: single-node
postgres:
Image: postgres
ImageTag: 9.6-alpine
resources:
requests:
cpu: "100m"
memory: "250Mi"
limits:
cpu: "1"
memory: "250Mi"
EnvVars:
- type: KeyValue
key: POSTGRES_USER
value: molgenis
- type: KeyValue
key: POSTGRES_PASSWORD
value: molgenis
- type: KeyValue
key: POSTGRES_DB
value: molgenis
opencpu:
Image: molgenis/opencpu
AlwaysPullImage: true
resources:
requests:
cpu: "100m"
memory: "256Mi"
limits:
cpu: "1"
memory: "512Mi"
Make ports configurable in values
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NodeSelector: {}
Add secrets and mount them in the molgenis-jenkins pod.
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PipelineSecrets:
Env:
Add Replace key for pipeline secrets
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# Set to false to keep existing secret
Replace: true
Update settings.xml value.
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# Passphrase for the pgp private key file, prefixed with literal:
PGPPassphrase: literal:xxxx
Add secrets and mount them in the molgenis-jenkins pod.
2018-06-28 09:25:27 +02:00
# Token for codecov.io service
Fix keys in values file
2018-06-28 12:04:46 +02:00
CodecovToken: xxxx
Add secrets and mount them in the molgenis-jenkins pod.
2018-06-28 09:25:27 +02:00
# Token for github bot account
Rename GithubToken => GitHubToken
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GitHubToken: xxxx
add gogs secrets
2018-06-29 23:30:38 +02:00
# Token for github bot account
GogsToken: xxxx
Add secrets and mount them in the molgenis-jenkins pod.
2018-06-28 09:25:27 +02:00
# Token for sonarcloud.io
Fix keys in values file
2018-06-28 12:04:46 +02:00
SonarToken: xxxx
added jenkins secret
2018-06-29 23:02:57 +02:00
# Password Local NEXUS
NexusPassword: xxxx
add docker hub credentials
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# Password hub.docker.com
DockerHubPassword: xxxx
Add secrets and mount them in the molgenis-jenkins pod.
2018-06-28 09:25:27 +02:00
File:
Add Replace key for pipeline secrets
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# Set to false to keep existing secret
Replace: true
Add secrets and mount them in the molgenis-jenkins pod.
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# PGP Private key in ascii format used to sign artifacts
PGPPrivateKeyAsc: |-
-----BEGIN PGP PRIVATE KEY BLOCK-----
xxxxx
-----END PGP PRIVATE KEY BLOCK-----
# maven.settings file
MavenSettingsXML: |-
<settings>
<localRepository>${user.home}/.mvnrepository</localRepository>
<interactiveMode>false</interactiveMode>
<mirrors>
<mirror>
<id>nexus</id>
<mirrorOf>external:*</mirrorOf>
Update values.yaml
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<url>http://nexus.molgenis-nexus:8081/repository/maven-central/</url>
Add secrets and mount them in the molgenis-jenkins pod.
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</mirror>
</mirrors>
<servers>
Update settings.xml value.
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<!-- for snapshot builds of the master -->
<server>
<id>sonatype-nexus-staging</id>
<username>molgenis</username>
<password>xxxx</password>
</server>
Add secrets and mount them in the molgenis-jenkins pod.
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<server>
<id>local-nexus</id>
Update values.yaml
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<url>http://nexus.molgenis-nexus:8081/repository/maven-snapshots/</url>
Add secrets and mount them in the molgenis-jenkins pod.
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<username>admin</username>
<password>xxxxx</password>
</server>
Update settings.xml value.
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<!-- for docker images-->
Add secrets and mount them in the molgenis-jenkins pod.
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<server>
Update settings.xml value.
2018-06-28 13:09:13 +02:00
<id>registry.molgenis.org</id>
<username>admin</username>
<password>xxxx</password>
Add secrets and mount them in the molgenis-jenkins pod.
2018-06-28 09:25:27 +02:00
</server>
</servers>
</settings>