Merge branch 'add-init-container' of p281392/molgenis-ops-docker-helm into master
This commit is contained in:
commit
3e78e896a3
@ -6,8 +6,44 @@ NEXUS repository for kubernetes to deploy on a kubernetes cluster with NFS-share
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This chart will deploy:
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This chart will deploy:
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- 1 NEXUS-nfs initialization container
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We need this container to avoid permission issues on the NEXUS docker
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- 1 NEXUS container
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- 1 NEXUS container
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- 1 MOLGENIS-httpd container ()to proxy the registry and docker to one domain)
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- 1 MOLGENIS-httpd container (to proxy the registry and docker to one domain)
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## Backup restore
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There are two steps in restoring the NEXUS.
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- Database
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- Blobstore
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### Restore the database
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Go to the commandline:
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```bash
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kubectl get pv
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```
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```bash
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| NAME | CAPACITY | ACCESS | MODES | RECLAIM | POLICY | STATUS | CLAIM | STORAGECLASS | REASON | AGE |
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| ---- | -------- | ------ | ----- | ------- | ------ | ------ | ----- | ------------ | ------ | --- |
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| pvc-45988f55-900f-11e8-a0b4-005056a51744 | 30G | RWX | | Retain | Bound | molgenis-nexus/molgenis-nfs-claim | nfs-provisioner-retain | | | 33d |
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| pvc-3984723d-220f-14e8-a98a-skjhf88823kk | 30G | RWO | | Delete | Bound | molgenis-test/molgenis-nfs-claim | nfs-provisioner | | | 33d |
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```
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The persistent volume is the one in the molgenis-nexus namespace.
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Go to the NFS-provisioner to the path of the persistent volume:
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```bash
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ls -t --full-time | head -7 | xargs cp ../restore-from-backup/
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```
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### Restore the blobstore
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You can copy the directory ```blobs``` to the target persistent volume ```/ blobs```.
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You can now bring the NEXUS back up.
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## Installing the Chart
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## Installing the Chart
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@ -20,6 +20,13 @@ spec:
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creationTimestamp: null
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creationTimestamp: null
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spec:
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spec:
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restartPolicy: {{ .Values.nexus.restartPolicy }}
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restartPolicy: {{ .Values.nexus.restartPolicy }}
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initContainers:
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- name: nexus-nfs
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image: busybox
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command: ["sh", "-c", "chown -R 200:200 /nexus-data"]
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volumeMounts:
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- name: molgenis-nexus-nfs
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mountPath: "/nexus-data"
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containers:
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containers:
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- name: {{ .Values.nexus.name }}
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- name: {{ .Values.nexus.name }}
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image: "{{ .Values.nexus.image.repository }}:{{ .Values.nexus.image.tag }}"
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image: "{{ .Values.nexus.image.repository }}:{{ .Values.nexus.image.tag }}"
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@ -29,7 +36,7 @@ spec:
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- containerPort: {{ .Values.nexus.port.docker }}
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- containerPort: {{ .Values.nexus.port.docker }}
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volumeMounts:
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volumeMounts:
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- name: molgenis-nexus-nfs
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- name: molgenis-nexus-nfs
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mountPath: "/nexus-data"
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mountPath: /nexus-data
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livenessProbe:
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livenessProbe:
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httpGet:
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httpGet:
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path: /
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path: /
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@ -13,7 +13,7 @@ nexus:
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selector: nexus
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selector: nexus
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restartPolicy: Always
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restartPolicy: Always
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image:
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image:
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repository: sonatype/nexus3
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repository: molgenis/nexus3
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tag: latest
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tag: latest
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pullPolicy: Always
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pullPolicy: Always
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port:
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port:
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@ -32,8 +32,8 @@ nexusProxy:
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selector: nexus-proxy
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selector: nexus-proxy
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restartPolicy: Always
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restartPolicy: Always
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image:
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image:
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repository: registry.webhosting.rug.nl/molgenis/httpd
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repository: molgenis/httpd
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tag: lts
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tag: latest
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pullPolicy: Always
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pullPolicy: Always
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port: 80
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port: 80
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service:
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service:
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