fix(test): updated helm charts for test purposes

jenkins/v1.0.0/templates/NOTES.txt

@@ -1,19 +0,0 @@
-1. Get the application URL by running these commands:
-{{- if .Values.ingress.enabled }}
-{{- range .Values.ingress.hosts }}
-  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ . }}{{ $.Values.ingress.path }}
-{{- end }}
-{{- else if contains "NodePort" .Values.service.type }}
-  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ template "jenkins.fullname" . }})
-  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
-  echo http://$NODE_IP:$NODE_PORT
-{{- else if contains "LoadBalancer" .Values.service.type }}
-     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
-           You can watch the status of by running 'kubectl get svc -w {{ template "jenkins.fullname" . }}'
-  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ template "jenkins.fullname" . }} -o jsonpath='{.status.loadBalancer.ingress[0].ip}')
-  echo http://$SERVICE_IP:{{ .Values.service.port }}
-{{- else if contains "ClusterIP" .Values.service.type }}
-  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app={{ template "jenkins.name" . }},release={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
-  echo "Visit http://127.0.0.1:8080 to use your application"
-  kubectl port-forward $POD_NAME 8080:80
-{{- end }}

jenkins/v1.0.0/templates/_helpers.tpl

@@ -1,32 +0,0 @@
-{{/* vim: set filetype=mustache: */}}
-{{/*
-Expand the name of the chart.
-*/}}
-{{- define "jenkins.name" -}}
-{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-
-{{/*
-Create a default fully qualified app name.
-We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
-If release name contains chart name it will be used as a full name.
-*/}}
-{{- define "jenkins.fullname" -}}
-{{- if .Values.fullnameOverride -}}
-{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- $name := default .Chart.Name .Values.nameOverride -}}
-{{- if contains $name .Release.Name -}}
-{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-{{- end -}}
-{{- end -}}
-
-{{/*
-Create chart name and version as used by the chart label.
-*/}}
-{{- define "jenkins.chart" -}}
-{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
-{{- end -}}

jenkins/v1.0.0/templates/deployment.yaml

@@ -1,51 +0,0 @@
-apiVersion: apps/v1beta2
-kind: Deployment
-metadata:
-  name: {{ template "jenkins.fullname" . }}
-  labels:
-    app: {{ template "jenkins.name" . }}
-    chart: {{ template "jenkins.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  replicas: {{ .Values.replicaCount }}
-  selector:
-    matchLabels:
-      app: {{ template "jenkins.name" . }}
-      release: {{ .Release.Name }}
-  template:
-    metadata:
-      labels:
-        app: {{ template "jenkins.name" . }}
-        release: {{ .Release.Name }}
-    spec:
-      containers:
-        - name: {{ .Chart.Name }}
-          image: "{{ .Values.image.repository }}:{{ .Values.image.tag }}"
-          imagePullPolicy: {{ .Values.image.pullPolicy }}
-          ports:
-            - name: http
-              containerPort: 8080
-              protocol: TCP
-          livenessProbe:
-            httpGet:
-              path: /
-              port: http
-          readinessProbe:
-            httpGet:
-              path: /
-              port: http
-          resources:
-{{ toYaml .Values.resources | indent 12 }}
-    {{- with .Values.nodeSelector }}
-      nodeSelector:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.affinity }}
-      affinity:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.tolerations }}
-      tolerations:
-{{ toYaml . | indent 8 }}
-    {{- end }}

jenkins/v1.0.0/templates/deployment/jenkins-agent-deployment.yaml

@@ -0,0 +1,39 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  annotations:
+    kompose.cmd: kompose convert
+    kompose.version: 1.13.0 ()
+  creationTimestamp: null
+  labels:
+    io.kompose.service: jenkins-agent-worker
+  name: jenkins-agent-worker
+spec:
+  replicas: 1
+  strategy:
+    type: Recreate
+  template:
+    metadata:
+      creationTimestamp: null
+      labels:
+        io.kompose.service: jenkins-agent-worker
+    spec:
+      containers:
+      - env:
+        - name: JENKINS_SLAVE_SSH_PUBKEY
+          value: ssh-rsa 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
+            sido@client-145-100-225-240.surfnet.eduroam.rug.nl
+        image: registry.molgenis.org/molgenis-ops-releases/jenkins-agent-worker:lts
+        name: jenkins-agent-worker
+        ports:
+        - containerPort: 22
+        resources: {}
+        volumeMounts:
+        - mountPath: /var/run/docker.sock
+          name: jenkins-agent-worker-claim
+      restartPolicy: Always
+      volumes:
+      - name: jenkins-agent-worker-claim
+        persistentVolumeClaim:
+          claimName: jenkins-agent-worker-claim
+status: {}

jenkins/v1.0.0/templates/deployment/jenkins-master-deployment.yaml

@@ -0,0 +1,40 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  annotations:
+    kompose.cmd: kompose convert
+    kompose.version: 1.13.0 ()
+  creationTimestamp: null
+  labels:
+    io.kompose.service: jenkins-master
+  name: jenkins-master
+spec:
+  replicas: 1
+  strategy:
+    type: Recreate
+  template:
+    metadata:
+      creationTimestamp: null
+      labels:
+        io.kompose.service: jenkins-master
+    spec:
+      containers:
+      - env:
+        - name: JENKINS_ADMIN_PASS
+        - name: JENKINS_ADMIN_USER
+        image: registry.molgenis.org/molgenis-ops-releases/jenkins-master:lts
+        name: jenkins-master
+        ports:
+        - containerPort: 8080
+        resources: {}
+        volumeMounts:
+        - mountPath: /var/jenkins-home
+          name: jenkins-master-claim
+        - mountPath: /var/run/docker.sock
+          name: jenkins-master-claim
+      restartPolicy: Always
+      volumes:
+      - name: jenkins-master-claim
+        persistentVolumeClaim:
+          claimName: jenkins-master-claim
+status: {}

jenkins/v1.0.0/templates/ingress.yaml

@@ -1,38 +1,12 @@
-{{- if .Values.ingress.enabled -}}
-{{- $fullName := include "jenkins.fullname" . -}}
-{{- $ingressPath := .Values.ingress.path -}}
 apiVersion: extensions/v1beta1
 kind: Ingress
 metadata:
-  name: {{ $fullName }}
+  name: ingress-${SERVICE}
-  labels:
-    app: {{ template "jenkins.name" . }}
-    chart: {{ template "jenkins.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-{{- with .Values.ingress.annotations }}
-  annotations:
-{{ toYaml . | indent 4 }}
-{{- end }}
 spec:
-{{- if .Values.ingress.tls }}
-  tls:
-  {{- range .Values.ingress.tls }}
-    - hosts:
-      {{- range .hosts }}
-        - {{ . }}
-      {{- end }}
-      secretName: {{ .secretName }}
-  {{- end }}
-{{- end }}
   rules:
-  {{- range .Values.ingress.hosts }}
+  - host: ${SITENAME}
-    - host: {{ . }}
     http:
       paths:
-          - path: {{ $ingressPath }}
+      - backend:
-            backend:
+          serviceName: ${SERVICE}
-              serviceName: {{ $fullName }}
+          servicePort: 80
-              servicePort: http
-  {{- end }}
-{{- end }}

jenkins/v1.0.0/templates/service.yaml

@@ -1,19 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: {{ template "jenkins.fullname" . }}
-  labels:
-    app: {{ template "jenkins.name" . }}
-    chart: {{ template "jenkins.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  type: {{ .Values.service.type }}
-  ports:
-    - port: {{ .Values.service.port }}
-      targetPort: http
-      protocol: TCP
-      name: http
-  selector:
-    app: {{ template "jenkins.name" . }}
-    release: {{ .Release.Name }}

jenkins/v1.0.0/templates/services/jenkins-agent-service.yaml

@@ -0,0 +1,19 @@
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    kompose.cmd: kompose convert
+    kompose.version: 1.13.0 ()
+  creationTimestamp: null
+  labels:
+    io.kompose.service: jenkins-agent-worker
+  name: jenkins-agent-worker
+spec:
+  ports:
+  - name: "22"
+    port: 22
+    targetPort: 22
+  selector:
+    io.kompose.service: jenkins-agent-worker
+status:
+  loadBalancer: {}

jenkins/v1.0.0/templates/services/jenkins-master-service.yaml

@@ -0,0 +1,19 @@
+apiVersion: v1
+kind: Service
+metadata:
+  annotations:
+    kompose.cmd: kompose convert
+    kompose.version: 1.13.0 ()
+  creationTimestamp: null
+  labels:
+    io.kompose.service: jenkins-master
+  name: jenkins-master
+spec:
+  ports:
+  - name: "8080"
+    port: 8080
+    targetPort: 8080
+  selector:
+    io.kompose.service: jenkins-master
+status:
+  loadBalancer: {}

jenkins/v1.0.0/templates/volumes/jenkins-agent-pvc.yaml

@@ -0,0 +1,12 @@
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  creationTimestamp: null
+  name: jenkins-agent-data
+spec:
+  accessModes:
+  - ReadWriteOnce
+  resources:
+    requests:
+      storage: 100Mi
+status: {}

jenkins/v1.0.0/templates/volumes/jenkins-master-pvc.yaml

@@ -0,0 +1,12 @@
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  creationTimestamp: null
+  name: jenkins-master-data
+spec:
+  accessModes:
+  - ReadWriteOnce
+  resources:
+    requests:
+      storage: 100Mi
+status: {}

nexus/v1.0.0/templates/NOTES.txt

@@ -1,19 +0,0 @@
-1. Get the application URL by running these commands:
-{{- if .Values.ingress.enabled }}
-{{- range .Values.ingress.hosts }}
-  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ . }}{{ $.Values.ingress.path }}
-{{- end }}
-{{- else if contains "NodePort" .Values.service.type }}
-  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ template "nexus.fullname" . }})
-  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
-  echo http://$NODE_IP:$NODE_PORT
-{{- else if contains "LoadBalancer" .Values.service.type }}
-     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
-           You can watch the status of by running 'kubectl get svc -w {{ template "nexus.fullname" . }}'
-  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ template "nexus.fullname" . }} -o jsonpath='{.status.loadBalancer.ingress[0].ip}')
-  echo http://$SERVICE_IP:{{ .Values.service.port }}
-{{- else if contains "ClusterIP" .Values.service.type }}
-  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app={{ template "nexus.name" . }},release={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
-  echo "Visit http://127.0.0.1:8080 to use your application"
-  kubectl port-forward $POD_NAME 8080:80
-{{- end }}

nexus/v1.0.0/templates/_helpers.tpl

@@ -1,32 +0,0 @@
-{{/* vim: set filetype=mustache: */}}
-{{/*
-Expand the name of the chart.
-*/}}
-{{- define "nexus.name" -}}
-{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-
-{{/*
-Create a default fully qualified app name.
-We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
-If release name contains chart name it will be used as a full name.
-*/}}
-{{- define "nexus.fullname" -}}
-{{- if .Values.fullnameOverride -}}
-{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- $name := default .Chart.Name .Values.nameOverride -}}
-{{- if contains $name .Release.Name -}}
-{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
-{{- else -}}
-{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
-{{- end -}}
-{{- end -}}
-{{- end -}}
-
-{{/*
-Create chart name and version as used by the chart label.
-*/}}
-{{- define "nexus.chart" -}}
-{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
-{{- end -}}

nexus/v1.0.0/templates/deployment.yaml

@@ -1,51 +0,0 @@
-apiVersion: apps/v1beta2
-kind: Deployment
-metadata:
-  name: {{ template "nexus.fullname" . }}
-  labels:
-    app: {{ template "nexus.name" . }}
-    chart: {{ template "nexus.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  replicas: {{ .Values.replicaCount }}
-  selector:
-    matchLabels:
-      app: {{ template "nexus.name" . }}
-      release: {{ .Release.Name }}
-  template:
-    metadata:
-      labels:
-        app: {{ template "nexus.name" . }}
-        release: {{ .Release.Name }}
-    spec:
-      containers:
-        - name: {{ .Chart.Name }}
-          image: "{{ .Values.image.repository }}:{{ .Values.image.tag }}"
-          imagePullPolicy: {{ .Values.image.pullPolicy }}
-          ports:
-            - name: http
-              containerPort: 80
-              protocol: TCP
-          livenessProbe:
-            httpGet:
-              path: /
-              port: http
-          readinessProbe:
-            httpGet:
-              path: /
-              port: http
-          resources:
-{{ toYaml .Values.resources | indent 12 }}
-    {{- with .Values.nodeSelector }}
-      nodeSelector:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.affinity }}
-      affinity:
-{{ toYaml . | indent 8 }}
-    {{- end }}
-    {{- with .Values.tolerations }}
-      tolerations:
-{{ toYaml . | indent 8 }}
-    {{- end }}

nexus/v1.0.0/templates/deployment/httpd-deployment.yaml

@@ -0,0 +1,29 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  creationTimestamp: null
+  name: httpd
+  labels:
+    app: httpd
+spec:
+  replicas: 1
+  strategy: {}
+  template:
+    metadata:
+      labels:
+        app: httpd
+      creationTimestamp: null
+    spec:
+      containers:
+      - env:
+        - name: PROXY_SERVICE
+          value: nexus:8081,nexus:5000:v2
+        - name: SERVER_NAME
+          value: httpd:80
+        image: registry.webhosting.rug.nl/molgenis/httpd:lts
+        name: httpd
+        ports:
+        - containerPort: 80
+        resources: {}
+      restartPolicy: Always
+status: {}

nexus/v1.0.0/templates/deployment/nexus-deployment.yaml

@@ -0,0 +1,32 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  creationTimestamp: null
+  name: nexus
+spec:
+  replicas: 1
+  strategy:
+    type: Recreate
+  template:
+    metadata:
+      labels:
+        app: httpd
+      creationTimestamp: null
+    spec:
+      containers:
+      - image: sonatype/nexus3:latest
+        name: nexus
+        ports:
+        - containerPort: 8081
+        - containerPort: 5000
+        resources: {}
+        volumeMounts:
+        - mountPath: /nexus-data
+          name: molgenis-nexus-data
+      restartPolicy: Always
+      volumes:
+      - name: molgenis-nexus-data
+        persistentVolumeClaim:
+          claimName: molgenis-nexus-data
+status: {}
+

nexus/v1.0.0/templates/ingress.yaml

@@ -1,38 +1,12 @@
-{{- if .Values.ingress.enabled -}}
-{{- $fullName := include "nexus.fullname" . -}}
-{{- $ingressPath := .Values.ingress.path -}}
 apiVersion: extensions/v1beta1
 kind: Ingress
 metadata:
-  name: {{ $fullName }}
+  name: ingress-nexus
-  labels:
-    app: {{ template "nexus.name" . }}
-    chart: {{ template "nexus.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-{{- with .Values.ingress.annotations }}
-  annotations:
-{{ toYaml . | indent 4 }}
-{{- end }}
 spec:
-{{- if .Values.ingress.tls }}
-  tls:
-  {{- range .Values.ingress.tls }}
-    - hosts:
-      {{- range .hosts }}
-        - {{ . }}
-      {{- end }}
-      secretName: {{ .secretName }}
-  {{- end }}
-{{- end }}
   rules:
-  {{- range .Values.ingress.hosts }}
+  - host: registry.molgenis.org
-    - host: {{ . }}
     http:
       paths:
-          - path: {{ $ingressPath }}
+      - backend:
-            backend:
+          serviceName: httpd
-              serviceName: {{ $fullName }}
+          servicePort: 80
-              servicePort: http
-  {{- end }}
-{{- end }}

nexus/v1.0.0/templates/service.yaml

@@ -1,19 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: {{ template "nexus.fullname" . }}
-  labels:
-    app: {{ template "nexus.name" . }}
-    chart: {{ template "nexus.chart" . }}
-    release: {{ .Release.Name }}
-    heritage: {{ .Release.Service }}
-spec:
-  type: {{ .Values.service.type }}
-  ports:
-    - port: {{ .Values.service.port }}
-      targetPort: http
-      protocol: TCP
-      name: http
-  selector:
-    app: {{ template "nexus.name" . }}
-    release: {{ .Release.Name }}

nexus/v1.0.0/templates/services/httpd-service.yaml

@@ -0,0 +1,14 @@
+apiVersion: v1
+kind: Service
+metadata:
+  creationTimestamp: null
+  name: httpd
+spec:
+  ports:
+  - name: "80"
+    port: 80
+    targetPort: 80
+  selector:
+    app: nexus
+status:
+  loadBalancer: {}

nexus/v1.0.0/templates/services/nexus-service.yaml

@@ -0,0 +1,17 @@
+apiVersion: v1
+kind: Service
+metadata:
+  creationTimestamp: null
+  name: nexus
+  labels:
+    app: nexus
+spec:
+  ports:
+  - name: "8081"
+    port: 8081
+    targetPort: 8081
+  - name: "5000"
+    port: 5000
+    targetPort: 5000
+  selector:
+    app: nexus

nexus/v1.0.0/templates/volumes/nexus-pv.yaml

@@ -0,0 +1,16 @@
+apiVersion: v1
+kind: PersistentVolume
+metadata:
+  name: molgenis-nexus-data
+  labels:
+    name: nfs2
+spec:
+  storageClassName: nfs-class
+  capacity:
+    storage: 5Gi
+  accessModes:
+    - ReadWriteMany
+  persistentVolumeReclaimPolicy: Retain
+  nfs:
+    server: 192.168.64.10
+    path: /home/gcc/molgenis-nexus-data

nexus/v1.0.0/templates/volumes/nexus-pvc.yaml

@@ -0,0 +1,11 @@
+kind: PersistentVolumeClaim
+apiVersion: v1
+metadata:
+  name: molgenis-nexus-data
+spec:
+  storageClassName: nfs-class
+  accessModes:
+    - ReadWriteMany
+  resources:
+    requests:
+      storage: 5Gi