restructure dirs

molgenis-nexus/templates/_helpers.tpl

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+{{/* vim: set filetype=mustache: */}}
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "nexus.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "nexus.fullname" -}}
+{{- if .Values.fullnameOverride -}}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- $name := default .Chart.Name .Values.nameOverride -}}
+{{- if contains $name .Release.Name -}}
+{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "nexus.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
+{{- end -}}

molgenis-nexus/templates/deployments/httpd-deployment.yaml

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+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  creationTimestamp: null
+  name: {{ .Values.httpd.name }}
+  labels:
+    app: {{ .Values.httpd.name }}
+    environment: {{ .Values.environment }}
+spec:
+  replicas: {{ .Values.replicaCount }}
+  strategy:
+    type: {{ .Values.httpd.strategy.type }}
+  selector:
+    matchLabels:
+      app: {{ .Values.httpd.selector }}
+  template:
+    metadata:
+      labels:
+        app: {{ .Values.httpd.name }}
+      creationTimestamp: null
+    spec:
+      restartPolicy: {{ .Values.httpd.restartPolicy }}
+      containers:
+      - name: {{ .Values.httpd.name }}
+        image: "{{ .Values.httpd.image.repository }}:{{ .Values.httpd.image.tag }}"
+        imagePullPolicy: {{ .Values.httpd.image.pullPolicy }}
+        env:
+        - name: PROXY_SERVICE
+          value: "{{ .Values.nexus.name }}:{{ .Values.nexus.port.ui }},{{ .Values.nexus.name }}:{{ .Values.nexus.port.docker }}:{{ .Values.nexus.path.dockerV2 }}"
+        - name: SERVER_NAME
+          value: {{ .Values.httpd.hostname }}
+        ports:
+        - containerPort: {{ .Values.httpd.port }}
+        resources: {}

molgenis-nexus/templates/deployments/nexus-deployment.yaml

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+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  creationTimestamp: null
+  name: {{ .Values.nexus.name }}
+  labels:
+    app: {{ .Values.nexus.name }}
+    environment: {{ .Values.environment }}
+spec:
+  replicas: {{ .Values.replicaCount }}
+  strategy:
+    type: {{ .Values.nexus.strategy.type }}
+  selector:
+    matchLabels:
+      app: {{ .Values.nexus.selector }}
+  template:
+    metadata:
+      labels:
+        app: {{ .Values.nexus.name }}
+      creationTimestamp: null
+    spec:
+      volumes:
+      - name: {{ .Values.persistence.name }}
+        persistentVolumeClaim:
+          claimName: {{ .Values.persistence.name }}
+      restartPolicy: {{ .Values.nexus.restartPolicy }}
+      initContainers:
+      - name: volume-mount-nexus
+        image: busybox
+        command: ["sh", "-c", "chown -R 200:200 {{ .Values.persistence.mountPath }}"]
+        volumeMounts:
+        - name: {{ .Values.persistence.name }}
+          mountPath: "{{ .Values.persistence.mountPath }}"
+      containers:
+      - name: {{ .Values.nexus.name }}
+        image: "{{ .Values.nexus.image.repository }}:{{ .Values.nexus.image.tag }}"
+        imagePullPolicy: {{ .Values.nexus.image.pullPolicy }}
+        ports:
+        - containerPort: {{ .Values.nexus.port.ui }}
+        - containerPort: {{ .Values.nexus.port.docker }}
+        volumeMounts:
+        - name: {{ .Values.persistence.name }}
+          mountPath: "/nexus-data"
+

molgenis-nexus/templates/ingress.yaml

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+{{- if .Values.ingress.enabled }}
+{{- range .Values.ingress.hosts }}
+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: "{{ $.Release.Name }}-ingress"
+  labels:
+    app: httpd
+    chart: "{{ $.Chart.Name }}-{{ $.Chart.Version }}"
+    release: "{{ $.Release.Name }}"
+    heritage: "{{ $.Release.Service }}"
+  annotations:
+    kubernetes.io/ingress.class: "nginx"
+    nginx.ingress.kubernetes.io/proxy-body-size: "0"
+    {{- if .tls }}
+    ingress.kubernetes.io/secure-backends: "true"
+    {{- end }}
+    {{- range $key, $value := .annotations }}
+    {{ $key }}: {{ $value | quote }}
+    {{- end }}
+spec:
+  rules:
+  - host: {{ .name }}
+    http:
+      paths:
+        - path: {{ default "/" .path }}
+          backend:
+            serviceName: httpd
+            servicePort: 80
+{{- if .tls }}
+  tls:
+  - hosts:
+    - {{ .name }}
+    secretName: {{ .tlsSecret }}
+{{- end }}
+---
+{{- end }}
+{{- end }}

molgenis-nexus/templates/services/nexus-service.yaml

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+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ .Values.nexus.name }}
+  labels:
+    app: {{ .Values.nexus.name }}
+spec:
+  type: ClusterIP
+  ports:
+  - name: ui
+    port: {{ .Values.nexus.port.ui }}
+  - name: docker
+    port: {{ .Values.nexus.port.docker }}
+  selector:
+    app: {{ .Values.nexus.selector }}

molgenis-nexus/templates/volumes/nexus-pv.yaml

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+apiVersion: v1
+kind: PersistentVolume
+metadata:
+  name: {{ .Values.persistence.name }}
+  labels:
+    name: nfs2
+spec:
+  storageClassName: {{ .Values.persistence.storageClass }}
+  capacity:
+    storage: {{ .Values.persistence.size }}
+  accessModes:
+    - {{ .Values.persistence.accessMode }}
+  persistentVolumeReclaimPolicy: {{ .Values.persistence.reclaimPolicy }}
+  nfs:
+    server: {{ .Values.persistence.server }}
+    path: {{ .Values.persistence.mountPath }}

molgenis-nexus/templates/volumes/nexus-pvc.yaml

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+kind: PersistentVolumeClaim
+apiVersion: v1
+metadata:
+  name: {{ .Values.persistence.name }}
+spec:
+  storageClassName: {{ .Values.persistence.storageClass }}
+  accessModes:
+    - {{ .Values.persistence.accessMode }}
+  resources:
+    requests:
+      storage: {{ .Values.persistence.size }}