Merge branch 'master' of https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-helm
This commit is contained in:
sido
commit
8919984691
@ -1,6 +1,6 @@
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name: molgenis-jenkins
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home: https://jenkins.io/
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||||
version: 0.2.2
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version: 0.2.5
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appVersion: 2.107
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description: Molgenis installation for the jenkins chart.
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sources:
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|
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@ -1,10 +1,7 @@
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# Molgenis Jenkins Helm Chart
|
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|
||||
Jenkins master and slave cluster utilizing the Jenkins Kubernetes plugin
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||||
|
||||
* https://wiki.jenkins-ci.org/display/JENKINS/Kubernetes+Plugin
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|
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Inspired by the awesome work of Carlos Sanchez <mailto:carlos@apache.org>
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Jenkins master and slave cluster utilizing the Jenkins Kubernetes plugin.
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Wraps [the kuberenetes jenkins chart](https://github.com/kubernetes/charts/tree/master/stable/jenkins), see documentation there!
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||||
|
||||
## Chart Details
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||||
@ -15,223 +12,70 @@ This chart will do the following:
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|
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## Installing the Chart
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In the rancher UI, choose the molgenis-jenkins app from the catalog and deploy it.
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Usually, you'll be deploying this to the molgenis cluster.
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In the [Rancher Catalog](https://rancher.molgenis.org:7443/g/catalog), add the latest version of this repository.
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In the [molgenis cluster management page](https://rancher.molgenis.org:7443/p/c-mhkqb:project-2pf45/apps), choose the
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catalog, pick the molgenis-jenkins app from the catalog and deploy it.
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## Configuration
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The following tables list the configurable parameters of the Jenkins chart and their default values.
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You can paste these values into the Rancher Answers if you like.
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Array values can be added as {value, value, value}, e.g.
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When deploying, you can paste values into the Rancher Answers to override the defaults in this chart.
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||||
Array values can be added as {value, value, value}.
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||||
```
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jenkins.Master.HostName=jenkins.molgenis.org
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jenkins.Master.AdminPassword=pa$$word
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jenkins.Persistence.Enabled=false
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jenkins.Master.InstallPlugins={kubernetes:1.8.4, workflow-aggregator:2.5, workflow-job:2.21, credentials-binding:1.16, git:3.9.1}
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PipelineSecrets.Env.PGPPassphrase=literal:S3cr3t
|
||||
```
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> Because we use jenkins as a sub-chart, you should prefix all values with `jenkins`!
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|
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### Jenkins Master
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| Parameter | Description | Default |
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| --------------------------------- | ------------------------------------ | ---------------------------------------------------------------------------- |
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| `nameOverride` | Override the resource name prefix | `jenkins` |
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| `fullnameOverride` | Override the full resource names | `jenkins-{release-name}` (or `jenkins` if release-name is `jenkins`) |
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| `Master.Name` | Jenkins master name | `jenkins-master` |
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| `Master.Image` | Master image name | `jenkinsci/jenkins` |
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| `Master.ImageTag` | Master image tag | `lts` |
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| `Master.ImagePullPolicy` | Master image pull policy | `Always` |
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| `Master.ImagePullSecret` | Master image pull secret | Not set |
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| `Master.Component` | k8s selector key | `jenkins-master` |
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| `Master.UseSecurity` | Use basic security | `true` |
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| `Master.AdminUser` | Admin username (and password) created as a secret if useSecurity is true | `admin` |
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| `Master.Cpu` | Master requested cpu | `200m` |
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| `Master.Memory` | Master requested memory | `256Mi` |
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| `Master.InitContainerEnv` | Environment variables for Init Container | Not set |
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| `Master.ContainerEnv` | Environment variables for Jenkins Container | Not set |
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| `Master.RunAsUser` | uid that jenkins runs with | `0` |
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| `Master.FsGroup` | uid that will be used for persistent volume | `0` |
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| `Master.ServiceAnnotations` | Service annotations | `{}` |
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| `Master.ServiceType` | k8s service type | `LoadBalancer` |
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| `Master.ServicePort` | k8s service port | `8080` |
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| `Master.NodePort` | k8s node port | Not set |
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| `Master.HealthProbes` | Enable k8s liveness and readiness probes | `true` |
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| `Master.HealthProbesLivenessTimeout` | Set the timeout for the liveness probe | `120` |
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| `Master.HealthProbesReadinessTimeout` | Set the timeout for the readiness probe | `60` |
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| `Master.HealthProbeLivenessFailureThreshold` | Set the failure threshold for the liveness probe | `12` |
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| `Master.ContainerPort` | Master listening port | `8080` |
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| `Master.SlaveListenerPort` | Listening port for agents | `50000` |
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| `Master.DisabledAgentProtocols` | Disabled agent protocols | `JNLP-connect JNLP2-connect` |
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| `Master.CSRF.DefaultCrumbIssuer.Enabled` | Enable the default CSRF Crumb issuer | `true` |
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| `Master.CSRF.DefaultCrumbIssuer.ProxyCompatability` | Enable proxy compatibility | `true` |
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| `Master.CLI` | Enable CLI over remoting | `false` |
|
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| `Master.LoadBalancerSourceRanges` | Allowed inbound IP addresses | `0.0.0.0/0` |
|
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| `Master.LoadBalancerIP` | Optional fixed external IP | Not set |
|
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| `Master.JMXPort` | Open a port, for JMX stats | Not set |
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| `Master.CustomConfigMap` | Use a custom ConfigMap | `false` |
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| `Master.Ingress.Annotations` | Ingress annotations | `{}` |
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| `Master.Ingress.TLS` | Ingress TLS configuration | `[]` |
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| `Master.InitScripts` | List of Jenkins init scripts | Not set |
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| `Master.CredentialsXmlSecret` | Kubernetes secret that contains a 'credentials.xml' file | Not set |
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| `Master.SecretsFilesSecret` | Kubernetes secret that contains 'secrets' files | Not set |
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| `Master.Jobs` | Jenkins XML job configs | Not set |
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| `Master.InstallPlugins` | List of Jenkins plugins to install | `kubernetes:0.11 workflow-aggregator:2.5 credentials-binding:1.11 git:3.2.0` |
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| `Master.ScriptApproval` | List of groovy functions to approve | Not set |
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| `Master.NodeSelector` | Node labels for pod assignment | `{}` |
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| `Master.Affinity` | Affinity settings | `{}` |
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| `Master.Tolerations` | Toleration labels for pod assignment | `{}` |
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| `NetworkPolicy.Enabled` | Enable creation of NetworkPolicy resources. | `false` |
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| `NetworkPolicy.ApiVersion` | NetworkPolicy ApiVersion | `extensions/v1beta1` |
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| `rbac.install` | Create service account and ClusterRoleBinding for Kubernetes plugin | `false` |
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| `rbac.apiVersion` | RBAC API version | `v1beta1` |
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| `rbac.roleRef` | Cluster role name to bind to | `cluster-admin` |
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You can use [all configuration values of the jenkins subchart](https://github.com/kubernetes/charts/tree/master/stable/jenkins).
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> Because we use jenkins as a sub-chart, you should prefix all value keys with `jenkins`!
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### Jenkins Agent
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There is one additional group of configuration items specific for this chart, so not prefixed with `jenkins`:
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## PipelineSecrets
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When deployed, the chart creates a couple of kubernetes secrets that get used by jenkins and mounted in the jenkins
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build pods. The secrets, like the rest of the deployment, is namespaced so multiple instances can run beside
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each other with their own secrets.
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You can override the values at deploy time but otherwise also configure them
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[in Rancher](https://rancher.molgenis.org:7443/p/c-mhkqb:project-2pf45/secrets) or through kubectl.
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|
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### Env
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Environment variables stored in molgenis-pipeline-env secret, to be added as environment variables
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in the slave pods.
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|
||||
| Parameter | Description | Default |
|
||||
| ----------------------- | ----------------------------------------------- | ---------------------- |
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||||
| `Agent.AlwaysPullImage` | Always pull agent container image before build | `false` |
|
||||
| `Agent.Enabled` | Enable Kubernetes plugin jnlp-agent podTemplate | `true` |
|
||||
| `Agent.Image` | Agent image name | `jenkinsci/jnlp-slave` |
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| `Agent.ImagePullSecret` | Agent image pull secret | Not set |
|
||||
| `Agent.ImageTag` | Agent image tag | `2.62` |
|
||||
| `Agent.Privileged` | Agent privileged container | `false` |
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| `Agent.Cpu` | Agent requested cpu | `200m` |
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||||
| `Agent.Memory` | Agent requested memory | `256Mi` |
|
||||
| `Agent.volumes` | Additional volumes | `nil` |
|
||||
| ---------------------------------- | ------------------------------------ | --------------- |
|
||||
| `PipelineSecrets.Env.Replace` | Replace molgenis-pipeline-env secret | `true` |
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| `PipelineSecrets.Env.PGPPassphrase`| passphrase for the pgp signing key | `literal:xxxx` |
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| `PipelineSecrets.Env.CodecovToken` | token for codecov.io | `xxxx` |
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||||
| `PipelineSecrets.Env.GitHubToken` | token for GH molgenis-jenkins user | `xxxx` |
|
||||
| `PipelineSecrets.Env.SonarToken` | token for sonarcloud.io | `xxxx` | |
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||||
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### File
|
||||
|
||||
Environment variables stored in molgenis-pipeline-file secret, to be mounted as files
|
||||
in the `/root/.m2` directory of the slave pods.
|
||||
> The settings.xml file references the
|
||||
|
||||
| Parameter | Description | Default |
|
||||
| -------------------------------------- | ------------------------------------- | ------------------------------------------------------------------------------- |
|
||||
| `PipelineSecrets.File.Replace` | Replace molgenis-pipeline-file secret | `true` |
|
||||
| `PipelineSecrets.File.PGPPrivateKeyAsc`| pgp signing key in ascii form | `-----BEGIN PGP PRIVATE KEY BLOCK-----xxxxx-----END PGP PRIVATE KEY BLOCK-----` |
|
||||
| `PipelineSecrets.File.MavenSettingsXML`| Maven settings.xml file | `<settings>[...]</settings>` (see actual [values.yaml](values.yaml)) |
|
||||
|
||||
|
||||
## Command line use
|
||||
Specify each parameter using the `--set key=value[,key=value]` argument to `helm install`.
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||||
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||||
Alternatively, a YAML file that specifies the values for the parameters can be provided while installing the chart. For example,
|
||||
Alternatively, a YAML file that specifies the values for the parameters can be provided while installing the chart.
|
||||
For example,
|
||||
|
||||
```bash
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||||
$ helm install --name my-release -f values.yaml stable/jenkins
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$ helm install --name jenkins -f values.yaml molgenis-jenkins
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```
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> **Tip**: You can use the default [values.yaml](values.yaml)
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## Mounting volumes into your Agent pods
|
||||
|
||||
Your Jenkins Agents will run as pods, and it's possible to inject volumes where needed:
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||||
|
||||
```yaml
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Agent:
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volumes:
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||||
- type: Secret
|
||||
secretName: jenkins-mysecrets
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||||
mountPath: /var/run/secrets/jenkins-mysecrets
|
||||
```
|
||||
|
||||
The supported volume types are: `ConfigMap`, `EmptyDir`, `HostPath`, `Nfs`, `Pod`, `Secret`. Each type supports a different set of configurable attributes, defined by [the corresponding Java class](https://github.com/jenkinsci/kubernetes-plugin/tree/master/src/main/java/org/csanchez/jenkins/plugins/kubernetes/volumes).
|
||||
|
||||
## NetworkPolicy
|
||||
|
||||
To make use of the NetworkPolicy resources created by default,
|
||||
install [a networking plugin that implements the Kubernetes
|
||||
NetworkPolicy spec](https://kubernetes.io/docs/tasks/administer-cluster/declare-network-policy#before-you-begin).
|
||||
|
||||
For Kubernetes v1.5 & v1.6, you must also turn on NetworkPolicy by setting
|
||||
the DefaultDeny namespace annotation. Note: this will enforce policy for _all_ pods in the namespace:
|
||||
|
||||
kubectl annotate namespace default "net.beta.kubernetes.io/network-policy={\"ingress\":{\"isolation\":\"DefaultDeny\"}}"
|
||||
|
||||
Install helm chart with network policy enabled:
|
||||
|
||||
$ helm install stable/jenkins --set NetworkPolicy.Enabled=true
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||||
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||||
## Persistence
|
||||
|
||||
The Jenkins image stores persistence under `/var/jenkins_home` path of the container. A dynamically managed Persistent Volume
|
||||
Claim is used to keep the data across deployments, by default. This is known to work in GCE, AWS, and minikube. Alternatively,
|
||||
a previously configured Persistent Volume Claim can be used.
|
||||
|
||||
It is possible to mount several volumes using `Persistence.volumes` and `Persistence.mounts` parameters.
|
||||
|
||||
### Persistence Values
|
||||
|
||||
| Parameter | Description | Default |
|
||||
| --------------------------- | ------------------------------- | --------------- |
|
||||
| `Persistence.Enabled` | Enable the use of a Jenkins PVC | `true` |
|
||||
| `Persistence.ExistingClaim` | Provide the name of a PVC | `nil` |
|
||||
| `Persistence.AccessMode` | The PVC access mode | `ReadWriteOnce` |
|
||||
| `Persistence.Size` | The size of the PVC | `8Gi` |
|
||||
| `Persistence.volumes` | Additional volumes | `nil` |
|
||||
| `Persistence.mounts` | Additional mounts | `nil` |
|
||||
|
||||
#### Existing PersistentVolumeClaim
|
||||
|
||||
1. Create the PersistentVolume
|
||||
1. Create the PersistentVolumeClaim
|
||||
1. Install the chart
|
||||
|
||||
```bash
|
||||
$ helm install --name my-release --set Persistence.ExistingClaim=PVC_NAME stable/jenkins
|
||||
```
|
||||
|
||||
## Custom ConfigMap
|
||||
|
||||
When creating a new parent chart with this chart as a dependency, the `CustomConfigMap` parameter can be used to override the default config.xml provided.
|
||||
It also allows for providing additional xml configuration files that will be copied into `/var/jenkins_home`. In the parent chart's values.yaml,
|
||||
set the `jenkins.Master.CustomConfigMap` value to true like so
|
||||
|
||||
```yaml
|
||||
jenkins:
|
||||
Master:
|
||||
CustomConfigMap: true
|
||||
```
|
||||
|
||||
and provide the file `templates/config.tpl` in your parent chart for your use case. You can start by copying the contents of `config.yaml` from this chart into your parent charts `templates/config.tpl` as a basis for customization. Finally, you'll need to wrap the contents of `templates/config.tpl` like so:
|
||||
|
||||
```yaml
|
||||
{{- define "override_config_map" }}
|
||||
<CONTENTS_HERE>
|
||||
{{ end }}
|
||||
```
|
||||
|
||||
## RBAC
|
||||
|
||||
If running upon a cluster with RBAC enabled you will need to do the following:
|
||||
|
||||
* `helm install stable/jenkins --set rbac.install=true`
|
||||
* Create a Jenkins credential of type Kubernetes service account with service account name provided in the `helm status` output.
|
||||
* Under configure Jenkins -- Update the credentials config in the cloud section to use the service account credential you created in the step above.
|
||||
|
||||
## Run Jenkins as non root user
|
||||
|
||||
The default settings of this helm chart let Jenkins run as root user with uid `0`.
|
||||
Due to security reasons you may want to run Jenkins as a non root user.
|
||||
Fortunately the default jenkins docker image `jenkins/jenkins` contains a user `jenkins` with uid `1000` that can be used for this purpose.
|
||||
|
||||
Simply use the following settings to run Jenkins as `jenkins` user with uid `1000`.
|
||||
|
||||
```yaml
|
||||
jenkins:
|
||||
Master:
|
||||
RunAsUser: 1000
|
||||
FsGroup: 1000
|
||||
```
|
||||
|
||||
Docs taken from https://github.com/jenkinsci/docker/blob/master/Dockerfile:
|
||||
_Jenkins is run with user `jenkins`, uid = 1000. If you bind mount a volume from the host or a data container,ensure you use the same uid_
|
||||
|
||||
## Running behind a forward proxy
|
||||
|
||||
The master pod uses an Init Container to install plugins etc. If you are behind a corporate proxy it may be useful to set `Master.InitContainerEnv` to add environment variables such as `http_proxy`, so that these can be downloaded.
|
||||
|
||||
Additionally, you may want to add env vars for the Jenkins container, and the JVM (`Master.JavaOpts`).
|
||||
|
||||
```yaml
|
||||
Master:
|
||||
InitContainerEnv:
|
||||
- name: http_proxy
|
||||
value: "http://192.168.64.1:3128"
|
||||
- name: https_proxy
|
||||
value: "http://192.168.64.1:3128"
|
||||
- name: no_proxy
|
||||
value: ""
|
||||
ContainerEnv:
|
||||
- name: http_proxy
|
||||
value: "http://192.168.64.1:3128"
|
||||
- name: https_proxy
|
||||
value: "http://192.168.64.1:3128"
|
||||
JavaOpts: >-
|
||||
-Dhttp.proxyHost=192.168.64.1
|
||||
-Dhttp.proxyPort=3128
|
||||
-Dhttps.proxyHost=192.168.64.1
|
||||
-Dhttps.proxyPort=3128
|
||||
```
|
||||
|
||||
@ -28,149 +28,93 @@ data:
|
||||
<org.csanchez.jenkins.plugins.kubernetes.KubernetesCloud plugin="kubernetes@{{ template "jenkins.kubernetes-version" . }}">
|
||||
<name>kubernetes</name>
|
||||
<templates>
|
||||
{{- if .Values.Agent.Enabled }}
|
||||
{{- range $podName, $pod := .Values.Pods }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.PodTemplate>
|
||||
<inheritFrom></inheritFrom>
|
||||
<name>default</name>
|
||||
<name>{{ $podName }}</name>
|
||||
<instanceCap>2147483647</instanceCap>
|
||||
<idleMinutes>0</idleMinutes>
|
||||
<label>{{ .Release.Name }}-{{ .Values.Agent.Component }}</label>
|
||||
<label>{{ .Label }}</label>
|
||||
<nodeSelector>
|
||||
{{- $local := dict "first" true }}
|
||||
{{- range $key, $value := .Values.Agent.NodeSelector }}
|
||||
{{- range $key, $value := .NodeSelector }}
|
||||
{{- if not $local.first }},{{- end }}
|
||||
{{- $key }}={{ $value }}
|
||||
{{- $_ := set $local "first" false }}
|
||||
{{- end }}</nodeSelector>
|
||||
<nodeUsageMode>EXCLUSIVE</nodeUsageMode>
|
||||
<nodeUsageMode>{{ .NodeUsageMode }}</nodeUsageMode>
|
||||
<volumes>
|
||||
{{- range $index, $volume := .Values.Agent.volumes }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.volumes.{{ $volume.type }}Volume>
|
||||
{{- range $index, $volume := .volumes }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.volumes.{{ .type }}Volume>
|
||||
{{- range $key, $value := $volume }}{{- if not (eq $key "type") }}
|
||||
<{{ $key }}>{{ $value }}</{{ $key }}>
|
||||
{{- end }}{{- end }}
|
||||
</org.csanchez.jenkins.plugins.kubernetes.volumes.{{ $volume.type }}Volume>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.volumes.{{ .type }}Volume>
|
||||
{{- end }}
|
||||
</volumes>
|
||||
<containers>
|
||||
{{- range $containerName, $container := .Containers }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.ContainerTemplate>
|
||||
<name>jnlp</name>
|
||||
<image>{{ .Values.Agent.Image }}:{{ .Values.Agent.ImageTag }}</image>
|
||||
{{- if .Values.Agent.Privileged }}
|
||||
<name>{{ $containerName }}</name>
|
||||
<image>{{ .Image }}:{{ .ImageTag | default "latest" }}</image>
|
||||
<ports>
|
||||
{{- range $index, $envVar := .Ports }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.PortMapping>
|
||||
<name>{{ .name }}</name>
|
||||
<containerPort>{{ .containerPort }}</containerPort>
|
||||
<hostPort>{{ .hostPort }}</hostPort>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.PortMapping>
|
||||
{{- end }}
|
||||
</ports>
|
||||
{{- if .Privileged }}
|
||||
<privileged>true</privileged>
|
||||
{{- else }}
|
||||
<privileged>false</privileged>
|
||||
{{- end }}
|
||||
<alwaysPullImage>{{ .Values.Agent.AlwaysPullImage }}</alwaysPullImage>
|
||||
<workingDir>/home/jenkins</workingDir>
|
||||
<command></command>
|
||||
<args>${computer.jnlpmac} ${computer.name}</args>
|
||||
<ttyEnabled>false</ttyEnabled>
|
||||
<resourceRequestCpu>{{.Values.Agent.Cpu}}</resourceRequestCpu>
|
||||
<resourceRequestMemory>{{.Values.Agent.Memory}}</resourceRequestMemory>
|
||||
<resourceLimitCpu>{{.Values.Agent.Cpu}}</resourceLimitCpu>
|
||||
<resourceLimitMemory>{{.Values.Agent.Memory}}</resourceLimitMemory>
|
||||
<envVars>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.ContainerEnvVar>
|
||||
<key>JENKINS_URL</key>
|
||||
<value>http://{{ template "jenkins.fullname" . }}:{{.Values.Master.ServicePort}}{{ default "" .Values.Master.JenkinsUriPrefix }}</value>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.ContainerEnvVar>
|
||||
</envVars>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.ContainerTemplate>
|
||||
</containers>
|
||||
<envVars/>
|
||||
<annotations/>
|
||||
{{- if .Values.Agent.ImagePullSecret }}
|
||||
<imagePullSecrets>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.PodImagePullSecret>
|
||||
<name>{{ .Values.Agent.ImagePullSecret }}</name>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.PodImagePullSecret>
|
||||
</imagePullSecrets>
|
||||
{{- if .AlwaysPullImage }}
|
||||
<alwaysPullImage>true</alwaysPullImage>
|
||||
{{- else }}
|
||||
<imagePullSecrets/>
|
||||
<alwaysPullImage>false</alwaysPullImage>
|
||||
{{- end }}
|
||||
<nodeProperties/>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.PodTemplate>
|
||||
{{- end -}}
|
||||
{{- if .Values.Pod.Enabled }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.PodTemplate>
|
||||
<inheritFrom></inheritFrom>
|
||||
<name>{{ .Values.Pod.Label }}</name>
|
||||
<instanceCap>2147483647</instanceCap>
|
||||
<idleMinutes>0</idleMinutes>
|
||||
<label>{{ .Values.Pod.Label }}</label>
|
||||
<nodeSelector>
|
||||
{{- $local := dict "first" true }}
|
||||
{{- range $key, $value := .Values.Pod.NodeSelector }}
|
||||
{{- if not $local.first }},{{- end }}
|
||||
{{- $key }}={{ $value }}
|
||||
{{- $_ := set $local "first" false }}
|
||||
{{- end }}</nodeSelector>
|
||||
<nodeUsageMode>NORMAL</nodeUsageMode>
|
||||
<volumes>
|
||||
{{- range $index, $volume := .Values.Pod.volumes }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.volumes.{{ $volume.type }}Volume>
|
||||
{{- range $key, $value := $volume }}{{- if not (eq $key "type") }}
|
||||
<{{ $key }}>{{ $value }}</{{ $key }}>
|
||||
{{- end }}{{- end }}
|
||||
</org.csanchez.jenkins.plugins.kubernetes.volumes.{{ $volume.type }}Volume>
|
||||
{{- end }}
|
||||
</volumes>
|
||||
<containers>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.ContainerTemplate>
|
||||
<name>{{ .Values.Pod.Label }}</name>
|
||||
<image>{{ .Values.Pod.Image }}:{{ .Values.Pod.ImageTag }}</image>
|
||||
{{- if .Values.Pod.Privileged }}
|
||||
<privileged>true</privileged>
|
||||
{{- else }}
|
||||
<privileged>false</privileged>
|
||||
{{- end }}
|
||||
<alwaysPullImage>{{ .Values.Pod.AlwaysPullImage }}</alwaysPullImage>
|
||||
<workingDir>/home/jenkins</workingDir>
|
||||
<command>{{ .Values.Pod.Command }}</command>
|
||||
<args>{{ .Values.Pod.Args }}</args>
|
||||
{{- if .Values.Pod.TTY }}
|
||||
<command>{{ .Command | default "cat" }}</command>
|
||||
<args>{{ .Args | default "" }}</args>
|
||||
{{- if .TTY }}
|
||||
<ttyEnabled>true</ttyEnabled>
|
||||
{{- else }}
|
||||
<ttyEnabled>false</ttyEnabled>
|
||||
{{- end }}
|
||||
<resourceRequestCpu>{{.Values.Pod.Cpu}}</resourceRequestCpu>
|
||||
<resourceRequestMemory>{{.Values.Pod.Memory}}</resourceRequestMemory>
|
||||
<resourceLimitCpu>{{.Values.Pod.Cpu}}</resourceLimitCpu>
|
||||
<resourceLimitMemory>{{.Values.Pod.Memory}}</resourceLimitMemory>
|
||||
{{- if .resources }}
|
||||
{{- if .resources.requests }}
|
||||
<resourceRequestCpu>{{ .resources.requests.cpu | default "" }}</resourceRequestCpu>
|
||||
<resourceRequestMemory>{{ .resources.requests.memory | default "" }}</resourceRequestMemory>
|
||||
{{- end }}
|
||||
{{- if .resources.limits }}
|
||||
<resourceLimitCpu>{{ .resources.limits.cpu | default "" }}</resourceLimitCpu>
|
||||
<resourceLimitMemory>{{ .resources.limits.memory | default "" }}</resourceLimitMemory>
|
||||
{{- end }}
|
||||
{{- end }}
|
||||
</org.csanchez.jenkins.plugins.kubernetes.ContainerTemplate>
|
||||
{{- end }}
|
||||
</containers>
|
||||
<envVars>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<key>PGP_PASSPHRASE</key>
|
||||
<secretName>molgenis-pipeline-env-secret</secretName>
|
||||
<secretKey>pgpPassphrase</secretKey>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.KeyValueEnvVar>
|
||||
<key>PGP_SECRETKEY</key>
|
||||
<value>keyfile:/root/.m2/key.asc</value>
|
||||
<key>JENKINS_URL</key>
|
||||
<value>http://{{ template "jenkins.fullname" $ }}:{{$.Values.Master.ServicePort}}{{ default "" $.Values.Master.JenkinsUriPrefix }}</value>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.KeyValueEnvVar>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<key>SONAR_TOKEN</key>
|
||||
<secretName>molgenis-pipeline-env-secret</secretName>
|
||||
<secretKey>sonarToken</secretKey>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<key>CODECOV_TOKEN</key>
|
||||
<secretName>molgenis-pipeline-env-secret</secretName>
|
||||
<secretKey>codecovToken</secretKey>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
<key>GITHUB_TOKEN</key>
|
||||
<secretName>molgenis-pipeline-env-secret</secretName>
|
||||
<secretKey>githubToken</secretKey>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.SecretEnvVar>
|
||||
{{- range $index, $envVar := .EnvVars }}
|
||||
<org.csanchez.jenkins.plugins.kubernetes.model.{{ .type }}EnvVar>
|
||||
{{- range $key, $value := $envVar }}{{- if not (eq $key "type") }}
|
||||
<{{ $key }}>{{ $value }}</{{ $key }}>
|
||||
{{- end }}{{- end }}
|
||||
</org.csanchez.jenkins.plugins.kubernetes.model.{{ .type }}EnvVar>
|
||||
{{- end }}
|
||||
</envVars>
|
||||
<annotations/>
|
||||
{{- if .Values.Pod.ImagePullSecret }}
|
||||
{{- if .ImagePullSecret }}
|
||||
<imagePullSecrets>
|
||||
<org.csanchez.jenkins.plugins.kubernetes.PodImagePullSecret>
|
||||
<name>{{ .Values.Pod.ImagePullSecret }}</name>
|
||||
<name>{{ .ImagePullSecret }}</name>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.PodImagePullSecret>
|
||||
</imagePullSecrets>
|
||||
{{- else }}
|
||||
@ -178,7 +122,7 @@ data:
|
||||
{{- end }}
|
||||
<nodeProperties/>
|
||||
</org.csanchez.jenkins.plugins.kubernetes.PodTemplate>
|
||||
{{- end -}}
|
||||
{{- end }}
|
||||
</templates>
|
||||
<serverUrl>https://kubernetes.default</serverUrl>
|
||||
<skipTlsVerify>false</skipTlsVerify>
|
||||
|
||||
@ -0,0 +1,16 @@
|
||||
apiVersion: v1
|
||||
kind: Secret
|
||||
metadata:
|
||||
# this is the jenkins id.
|
||||
name: "molgenis-jenkins-github-secret"
|
||||
labels:
|
||||
# so we know what type it is.
|
||||
"jenkins.io/credentials-type": "usernamePassword"
|
||||
annotations: {
|
||||
# description - can not be a label as spaces are not allowed
|
||||
"jenkins.io/credentials-description" : "oauth token for the molgenis-jenkins github user"
|
||||
}
|
||||
type: Opaque
|
||||
data:
|
||||
username: {{ "molgenis-jenkins" | b64enc | quote }}
|
||||
password: {{ .Values.PipelineSecrets.Env.GitHubToken | b64enc | quote }}
|
||||
@ -12,6 +12,6 @@ type: Opaque
|
||||
data:
|
||||
pgpPassphrase: {{ .Values.PipelineSecrets.Env.PGPPassphrase | b64enc | quote }}
|
||||
codecovToken: {{ .Values.PipelineSecrets.Env.CodecovToken | b64enc | quote }}
|
||||
githubToken: {{ .Values.PipelineSecrets.Env.GithubToken | b64enc | quote }}
|
||||
githubToken: {{ .Values.PipelineSecrets.Env.GitHubToken | b64enc | quote }}
|
||||
sonarToken: {{ .Values.PipelineSecrets.Env.SonarToken | b64enc | quote }}
|
||||
{{- end }}
|
||||
@ -8,59 +8,72 @@ jenkins:
|
||||
- workflow-job:2.21
|
||||
- credentials-binding:1.16
|
||||
- git:3.9.1
|
||||
- github-branch-source:2.3.6
|
||||
- kubernetes-credentials-provider:0.9
|
||||
- blueocean:1.6.1
|
||||
Jobs: |-
|
||||
molgenis: |-
|
||||
<?xml version='1.1' encoding='UTF-8'?>
|
||||
<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19">
|
||||
<jenkins.branch.OrganizationFolder plugin="branch-api@2.0.20">
|
||||
<actions/>
|
||||
<description></description>
|
||||
<properties>
|
||||
<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3">
|
||||
<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
|
||||
<dockerLabel></dockerLabel>
|
||||
<registry plugin="docker-commons@1.13"/>
|
||||
</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
|
||||
<jenkins.branch.NoTriggerOrganizationFolderProperty>
|
||||
<branches>.*</branches>
|
||||
</jenkins.branch.NoTriggerOrganizationFolderProperty>
|
||||
</properties>
|
||||
<folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20">
|
||||
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
|
||||
<folderViews class="jenkins.branch.OrganizationFolderViewHolder">
|
||||
<owner reference="../.."/>
|
||||
</folderViews>
|
||||
<healthMetrics>
|
||||
<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
|
||||
<nonRecursive>false</nonRecursive>
|
||||
</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
|
||||
</healthMetrics>
|
||||
<icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20">
|
||||
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
|
||||
<icon class="jenkins.branch.MetadataActionFolderIcon">
|
||||
<owner class="jenkins.branch.OrganizationFolder" reference="../.."/>
|
||||
</icon>
|
||||
<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
|
||||
<pruneDeadBranches>true</pruneDeadBranches>
|
||||
<daysToKeep>-1</daysToKeep>
|
||||
<numToKeep>-1</numToKeep>
|
||||
</orphanedItemStrategy>
|
||||
<triggers/>
|
||||
<triggers>
|
||||
<com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger plugin="cloudbees-folder@6.5.1">
|
||||
<spec>H H * * *</spec>
|
||||
<interval>86400000</interval>
|
||||
</com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger>
|
||||
</triggers>
|
||||
<disabled>false</disabled>
|
||||
<sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20">
|
||||
<data>
|
||||
<jenkins.branch.BranchSource>
|
||||
<source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1">
|
||||
<id>a1f535cd-ab83-4d42-8993-0c3e59cf139f</id>
|
||||
<remote>http://github.com/molgenis/molgenis.git</remote>
|
||||
<credentialsId></credentialsId>
|
||||
<navigators>
|
||||
<org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator plugin="github-branch-source@2.3.6">
|
||||
<repoOwner>molgenis</repoOwner>
|
||||
<credentialsId>molgenis-jenkins-github-secret</credentialsId>
|
||||
<traits>
|
||||
<jenkins.plugins.git.traits.BranchDiscoveryTrait/>
|
||||
<org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
|
||||
<strategyId>1</strategyId>
|
||||
</org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
|
||||
<org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
|
||||
<strategyId>1</strategyId>
|
||||
</org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
|
||||
<org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
|
||||
<strategyId>1</strategyId>
|
||||
<trust class="org.jenkinsci.plugins.github_branch_source.ForkPullRequestDiscoveryTrait$TrustPermission"/>
|
||||
</org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
|
||||
</traits>
|
||||
</source>
|
||||
<strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
|
||||
<properties class="empty-list"/>
|
||||
</strategy>
|
||||
</jenkins.branch.BranchSource>
|
||||
</data>
|
||||
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
|
||||
</sources>
|
||||
<factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory">
|
||||
<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
|
||||
</org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator>
|
||||
</navigators>
|
||||
<projectFactories>
|
||||
<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory plugin="workflow-multibranch@2.19">
|
||||
<scriptPath>Jenkinsfile</scriptPath>
|
||||
</factory>
|
||||
</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject>
|
||||
</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory>
|
||||
</projectFactories>
|
||||
<buildStrategies/>
|
||||
</jenkins.branch.OrganizationFolder>
|
||||
# Kubernetes secret that contains a 'credentials.xml' for Jenkins
|
||||
# CredentialsXmlSecret: jenkins-credentials
|
||||
# Kubernetes secret that contains files to be put in the Jenkins 'secrets' directory,
|
||||
@ -70,25 +83,10 @@ jenkins:
|
||||
CustomConfigMap: true
|
||||
rbac:
|
||||
install: true
|
||||
# A second pod template for maven builds
|
||||
Pod:
|
||||
Enabled: true
|
||||
Image: "webhost12.service.rug.nl/molgenis/molgenis-maven"
|
||||
ImageTag: latest
|
||||
# ImagePullSecret: jenkins
|
||||
Label: "molgenis-maven"
|
||||
Privileged: false
|
||||
Cpu: ""
|
||||
Memory: ""
|
||||
# You may want to change this to true while testing a new image
|
||||
AlwaysPullImage: false
|
||||
Command: "/bin/sh -c"
|
||||
Args: "cat"
|
||||
TTY: true
|
||||
# You can define the volumes that you want to mount for this container
|
||||
# Allowed types are: ConfigMap, EmptyDir, HostPath, Nfs, Pod, Secret
|
||||
# Configure the attributes as they appear in the corresponding Java class for that type
|
||||
# https://github.com/jenkinsci/kubernetes-plugin/tree/master/src/main/java/org/csanchez/jenkins/plugins/kubernetes/volumes
|
||||
Pods:
|
||||
molgenis:
|
||||
Label: molgenis
|
||||
NodeUsageMode: NORMAL
|
||||
volumes:
|
||||
- type: HostPath
|
||||
hostPath: "/var/run/docker.sock"
|
||||
@ -96,9 +94,66 @@ jenkins:
|
||||
- type: Secret
|
||||
secretName: molgenis-pipeline-file-secret
|
||||
mountPath: "/root/.m2"
|
||||
Containers:
|
||||
maven:
|
||||
Image: "registry.webhosting.rug.nl/molgenis/maven"
|
||||
TTY: true
|
||||
resources:
|
||||
requests:
|
||||
cpu: "1000m"
|
||||
limits:
|
||||
memory: "1Gi"
|
||||
alpine:
|
||||
Image: "spotify/alpine"
|
||||
TTY: true
|
||||
elasticsearch:
|
||||
Image: "elasticsearch"
|
||||
ImageTag: "5.5.1"
|
||||
TTY: true
|
||||
Ports:
|
||||
- name: rest
|
||||
containerPort: "9200"
|
||||
hostPort: "9200"
|
||||
- name: api
|
||||
containerPort: "9300"
|
||||
hostPort: "9300"
|
||||
postgres:
|
||||
Image: "postgres"
|
||||
ImageTag: "9.6-alpine"
|
||||
TTY: true
|
||||
Ports:
|
||||
- name: postgres
|
||||
containerPort: "5432"
|
||||
hostPort: "5432"
|
||||
EnvVars:
|
||||
- type: Secret
|
||||
key: PGP_PASSPHRASE
|
||||
secretName: molgenis-pipeline-env-secret
|
||||
secretKey: pgpPassphrase
|
||||
- type: KeyValue
|
||||
key: PGP_SECRETKEY
|
||||
value: "keyfile:/root/.m2/key.asc"
|
||||
- type: KeyValue
|
||||
key: npm_config_registry
|
||||
value: "http://nexus.molgenis-nexus:8081/repository/npm-central"
|
||||
- type: KeyValue
|
||||
key: yarn_proxy
|
||||
value: "http://nexus.molgenis-nexus:8081/repository/npm-central"
|
||||
- type: Secret
|
||||
key: SONAR_TOKEN
|
||||
secretName: molgenis-pipeline-env-secret
|
||||
secretKey: sonarToken
|
||||
- type: Secret
|
||||
key: CODECOV_TOKEN
|
||||
secretName: molgenis-pipeline-env-secret
|
||||
secretKey: codecovToken
|
||||
- type: Secret
|
||||
key: GITHUB_TOKEN
|
||||
secretName: molgenis-pipeline-env-secret
|
||||
secretKey: githubToken
|
||||
# If needed
|
||||
# ImagePullSecret: jenkins
|
||||
NodeSelector: {}
|
||||
# Key Value selectors. Ex:
|
||||
# jenkins-agent: v1
|
||||
PipelineSecrets:
|
||||
Env:
|
||||
# Set to false to keep existing secret
|
||||
@ -108,7 +163,7 @@ PipelineSecrets:
|
||||
# Token for codecov.io service
|
||||
CodecovToken: xxxx
|
||||
# Token for github bot account
|
||||
GithubToken: xxxx
|
||||
GitHubToken: xxxx
|
||||
# Token for sonarcloud.io
|
||||
SonarToken: xxxx
|
||||
File:
|
||||
@ -128,7 +183,7 @@ PipelineSecrets:
|
||||
<mirror>
|
||||
<id>nexus</id>
|
||||
<mirrorOf>external:*</mirrorOf>
|
||||
<url>https://registry.molgenis.org/repository/maven-central/</url>
|
||||
<url>http://nexus.molgenis-nexus:8081/repository/maven-central/</url>
|
||||
</mirror>
|
||||
</mirrors>
|
||||
<servers>
|
||||
@ -140,7 +195,7 @@ PipelineSecrets:
|
||||
</server>
|
||||
<server>
|
||||
<id>local-nexus</id>
|
||||
<url>https://registry.molgenis.org/repository/maven-snapshots/</url>
|
||||
<url>http://nexus.molgenis-nexus:8081/repository/maven-snapshots/</url>
|
||||
<username>admin</username>
|
||||
<password>xxxxx</password>
|
||||
</server>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user