chore (molgenis-jenkins): Retrieve pipeline secrets from vault when possible.
This commit is contained in:
Fleur Kelpin
parent
008fd5261e
commit
a836ab4e6e
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@ -40,57 +40,62 @@ You can use [all configuration values of the jenkins subchart](https://github.co
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### GitHub Authentication delegation
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### GitHub Authentication delegation
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You need to setup a MOLGENIS - Jenkins GitHub OAuth App. You can do this by accessing this url: [add new OAuth app](https://github.com/settings/applications/new).
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You need to setup a MOLGENIS - Jenkins GitHub OAuth App. You can do this by accessing this url: [add new OAuth app](https://github.com/settings/applications/new).
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### Additional configuration
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### Secrets
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There is one additional group of configuration items specific for this chart, so not prefixed with `jenkins`:
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* PipelineSecrets
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When deployed, the chart creates a couple of kubernetes secrets that get used by jenkins.
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When deployed, the chart creates a couple of kubernetes secrets that get used by jenkins and mounted in the jenkins
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build pods. The secrets, like the rest of the deployment, is namespaced so multiple instances can run beside
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each other with their own secrets.
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You can override the values at deploy time but otherwise also configure them
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You can override the values at deploy time but otherwise also configure them
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[in Rancher](https://rancher.molgenis.org:7443/p/c-mhkqb:project-2pf45/secrets) or through kubectl.
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[in Rancher](https://rancher.molgenis.org:7443/p/c-mhkqb:project-2pf45/secrets) or through kubectl.
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* Vault
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#### Vault
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New vault token to be used by the pods to retrieve their tokens from the vault.
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The vault secret gets mounted in the vault pod so pipeline scripts can retrieve secrets from the vault.
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| Parameter | Description | Default |
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| Parameter | Description | Default |
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| ---------------------------------- | ------------------------------------------ | ---------------------------------------------- |
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| ------------------------- | ------------------------------------------ | ---------------------------------------------- |
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| `PipelineSecrets.Vault.Replace` | Replace the molgenis-pipeline-vault secret | `true` |
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| `secret.vault.token` | Token to log into the hashicorp vault | `xxxx` |
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| `PipelineSecrets.Vault.Token` | Token to log into the hashicorp vault | `xxxx` |
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| `secret.vault.addr` | Address of the vault | `https:vault-operator.vault-operator.svc:8200` |
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| `PipelineSecrets.Vault.Addr` | Address of the vault | `https:vault-operator.vault-operator.svc:8200` |
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| `secret.vault.skipVerify` | Skip verification of the https connection | `1` |
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| `PipelineSecrets.Vault.SkipVerify` | Skip verification of the https connection | `1` |
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* Env
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#### GitHub
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Environment variables stored in molgenis-pipeline-env secret, to be added as environment variables
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Token used by Jenkins to authenticate on GitHub.
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in the slave pods.
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| Parameter | Description | Default |
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| Parameter | Description | Default |
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| --------------------------------------- | ----------------------------------------- | --------------- |
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| --------------------- | ------------------------ | ------------------ |
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| `PipelineSecrets.Env.Replace` | Replace molgenis-pipeline-env secret | `true` |
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| `secret.gitHub.user` | username for the account | `molgenis-jenkins` |
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| `PipelineSecrets.Env.PGPPassphrase` | passphrase for the pgp signing key | `literal:xxxx` |
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| `secret.gitHub.token` | token for the account | `xxxx` |
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| `PipelineSecrets.Env.CodecovToken` | token for codecov.io | `xxxx` |
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| `PipelineSecrets.Env.GitHubToken` | token for GH molgenis-jenkins user | `xxxx` |
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| `PipelineSecrets.Env.NexusPassword` | token for molgenis-jenkins user in NEXUS | `xxxx` |
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| `PipelineSecrets.Env.DockerHubPassword` | token for molgenis user in hub.docker.com | `xxxx` |
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| `PipelineSecrets.Env.SonarToken` | token for sonarcloud.io | `xxxx` |
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| `PipelineSecrets.Env.NpmToken` | token for npmjs.org | `xxxx` |
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| `PipelineSecrets.Env.SauceAccessKey` | token for saucelabs.com | `xxxx` |
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* File
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#### Gogs
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Environment variables stored in molgenis-pipeline-file secret, to be mounted as files
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Token used by Jenkins to authenticate on the [RuG Webhosting Gogs](https://git.webhosting.rug.nl).
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in the `/root/.m2` directory of the slave pods.
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> The settings.xml file references the
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| Parameter | Description | Default |
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| Parameter | Description | Default |
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| -------------------------------------- | ------------------------------------- | ------------------------------------------------------------------------------- |
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| ------------------- | ------------------------ | --------- |
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| `PipelineSecrets.File.Replace` | Replace molgenis-pipeline-file secret | `true` |
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| `secret.gogs.user` | username for the account | `p281392` |
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| `PipelineSecrets.File.PGPPrivateKeyAsc`| pgp signing key in ascii form | `-----BEGIN PGP PRIVATE KEY BLOCK-----xxxxx-----END PGP PRIVATE KEY BLOCK-----` |
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| `secret.gogs.token` | token for the account | `xxxx` |
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| `PipelineSecrets.File.MavenSettingsXML`| Maven settings.xml file | `<settings>[...]</settings>` (see actual [values.yaml](values.yaml)) |
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#### Legacy:
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##### Docker Hub
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Account used in pipeline builds to push docker images to `hub.docker.com`.
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> They should read `secret/gcc/account/dockerhub` from vault instead!
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| Parameter | Description | Default |
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| --------------------------- | ------------------------ | --------------- |
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| `secret.dockerHub.user` | username for the account | `molgenisci` |
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| `secret.dockerHub.password` | password for the account | `xxxx` |
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##### Registry
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Account used in pipeline builds to push docker images to `registry.molgenis.org`.
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> They should read `secret/ops/account/nexus` from vault instead!
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| Parameter | Description | Default |
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| --------------------------- | ------------------------ | --------- |
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| `secret.dockerHub.user` | username for the account | `admin` |
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| `secret.dockerHub.password` | password for the account | `xxxx` |
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## Command line use
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## Command line use
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Specify each parameter using the `--set key=value[,key=value]` argument to `helm install`.
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Specify each parameter using the `--set key=value[,key=value]` argument to `helm install`.
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@ -8,9 +8,9 @@ metadata:
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"jenkins.io/credentials-type": "usernamePassword"
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"jenkins.io/credentials-type": "usernamePassword"
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annotations: {
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annotations: {
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# description - can not be a label as spaces are not allowed
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "user to authenticate against Docker Hub (hub.docker.com)"
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"jenkins.io/credentials-description" : "(deprecated by vault) Account used in pipeline builds to push docker images to Docker Hub (hub.docker.com)"
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}
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}
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type: Opaque
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type: Opaque
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data:
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data:
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username: {{ "molgenisci" | b64enc | quote }}
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username: {{ .Values.secret.registry.user | b64enc | quote }}
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password: {{ .Values.PipelineSecrets.Env.DockerHubPassword | b64enc | quote }}
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password: {{ .Values.secret.registry.password | b64enc | quote }}
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@ -8,9 +8,9 @@ metadata:
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"jenkins.io/credentials-type": "usernamePassword"
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"jenkins.io/credentials-type": "usernamePassword"
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annotations: {
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annotations: {
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# description - can not be a label as spaces are not allowed
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "oauth token for the molgenis-jenkins github user"
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"jenkins.io/credentials-description" : "Oauth token for the {{.Values.secret.gitHub.user}} GitHub user"
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}
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}
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type: Opaque
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type: Opaque
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data:
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data:
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username: {{ "molgenis-jenkins" | b64enc | quote }}
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username: {{ .Values.secret.gitHub.user | b64enc | quote }}
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password: {{ .Values.PipelineSecrets.Env.GitHubToken | b64enc | quote }}
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password: {{ .Values.secret.gitHub.token | b64enc | quote }}
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@ -8,9 +8,9 @@ metadata:
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"jenkins.io/credentials-type": "usernamePassword"
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"jenkins.io/credentials-type": "usernamePassword"
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annotations: {
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annotations: {
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# description - can not be a label as spaces are not allowed
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "user to authenticate against GOGS (git.webhosting.rug.nl)"
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"jenkins.io/credentials-description" : "Account used to authenticate against RuG Webhosting Gogs."
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}
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}
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type: Opaque
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type: Opaque
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data:
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data:
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username: {{ "p281392" | b64enc | quote }}
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username: {{ .Values.secret.gogs.user | b64enc | quote }}
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password: {{ .Values.PipelineSecrets.Env.GogsToken | b64enc | quote }}
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password: {{ .Values.secret.gogs.token | b64enc | quote }}
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@ -1,16 +0,0 @@
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apiVersion: v1
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kind: Secret
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metadata:
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# this is the jenkins id.
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name: "molgenis-jenkins-nexus-secret"
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labels:
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# so we know what type it is.
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"jenkins.io/credentials-type": "usernamePassword"
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annotations: {
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "user to authenticate against NEXUS"
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}
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type: Opaque
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data:
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username: {{ "admin" | b64enc | quote }}
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password: {{ .Values.PipelineSecrets.Env.NexusPassword | b64enc | quote }}
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@ -0,0 +1,17 @@
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apiVersion: v1
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kind: Secret
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metadata:
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name: molgenis-jenkins-registry-secret
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labels:
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app: {{ template "jenkins.fullname" . }}
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chart: "{{ .Chart.Name }}-{{ .Chart.Version }}"
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release: "{{ .Release.Name }}"
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heritage: "{{ .Release.Service }}"
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annotations: {
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "(deprecated by vault) Account used in pipeline builds to push docker images to registry.molgenis.org."
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}
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type: Opaque
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data:
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username: {{ .Values.secret.registry.user | b64enc | quote }}
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password: {{ .Values.secret.registry.password | b64enc | quote }}
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@ -1,16 +0,0 @@
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apiVersion: v1
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kind: Secret
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metadata:
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# this is the jenkins id.
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name: "molgenis-jenkins-saucelabs-secret"
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labels:
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# so we know what type it is.
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"jenkins.io/credentials-type": "usernamePassword"
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annotations: {
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# description - can not be a label as spaces are not allowed
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"jenkins.io/credentials-description" : "user to authenticate against Saucelabs (saucelabs.com)"
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}
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type: Opaque
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data:
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username: {{ "molgenis-jenkins" | b64enc | quote }}
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password: {{ .Values.PipelineSecrets.Env.SauceAccessKey | b64enc | quote }}
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@ -1,18 +0,0 @@
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{{- if .Values.PipelineSecrets.Env.Replace }}
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apiVersion: v1
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kind: Secret
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metadata:
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name: molgenis-pipeline-env-secret
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labels:
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app: {{ template "jenkins.fullname" . }}
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chart: "{{ .Chart.Name }}-{{ .Chart.Version }}"
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release: "{{ .Release.Name }}"
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heritage: "{{ .Release.Service }}"
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type: Opaque
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data:
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pgpPassphrase: {{ .Values.PipelineSecrets.Env.PGPPassphrase | b64enc | quote }}
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codecovToken: {{ .Values.PipelineSecrets.Env.CodecovToken | b64enc | quote }}
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githubToken: {{ .Values.PipelineSecrets.Env.GitHubToken | b64enc | quote }}
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sonarToken: {{ .Values.PipelineSecrets.Env.SonarToken | b64enc | quote }}
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npmToken: {{ .Values.PipelineSecrets.Env.NpmToken | b64enc | quote }}
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{{- end }}
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@ -1,15 +0,0 @@
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{{- if .Values.PipelineSecrets.File.Replace }}
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apiVersion: v1
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kind: Secret
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metadata:
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name: molgenis-pipeline-file-secret
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labels:
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app: {{ template "jenkins.fullname" . }}
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chart: "{{ .Chart.Name }}-{{ .Chart.Version }}"
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release: "{{ .Release.Name }}"
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heritage: "{{ .Release.Service }}"
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type: Opaque
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data:
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key.asc: {{ .Values.PipelineSecrets.File.PGPPrivateKeyAsc | b64enc | quote }}
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settings.xml: {{ .Values.PipelineSecrets.File.MavenSettingsXML | b64enc | quote }}
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{{- end }}
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@ -1,4 +1,3 @@
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{{- if .Values.PipelineSecrets.Vault.Replace }}
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apiVersion: v1
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apiVersion: v1
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kind: Secret
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kind: Secret
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metadata:
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metadata:
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@ -10,7 +9,6 @@ metadata:
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heritage: "{{ .Release.Service }}"
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heritage: "{{ .Release.Service }}"
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type: Opaque
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type: Opaque
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data:
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data:
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token: {{ .Values.PipelineSecrets.Vault.Token | b64enc | quote }}
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token: {{ .Values.secret.vault.token | b64enc | quote }}
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addr: {{ .Values.PipelineSecrets.Vault.Addr | b64enc | quote }}
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addr: {{ .Values.secret.vault.addr | b64enc | quote }}
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skipVerify: {{ .Values.PipelineSecrets.Vault.SkipVerify | b64enc | quote }}
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skipVerify: {{ .Values.secret.vault.skipVerify | b64enc | quote }}
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{{- end }}
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@ -368,8 +368,8 @@ jenkins:
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install: true
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install: true
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Pods:
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Pods:
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molgenis:
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molgenis:
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Label: molgenisv2
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Label: molgenis
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NodeUsageMode: EXCLUSIVE
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NodeUsageMode: NORMAL
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volumes:
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volumes:
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- type: HostPath
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- type: HostPath
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hostPath: "/var/run/docker.sock"
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hostPath: "/var/run/docker.sock"
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@ -417,39 +417,6 @@ jenkins:
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secretName: molgenis-pipeline-vault-secret
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secretName: molgenis-pipeline-vault-secret
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secretKey: addr
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secretKey: addr
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NodeSelector: {}
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NodeSelector: {}
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molgenis-legacy:
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InheritFrom: molgenis
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Label: molgenis
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NodeUsageMode: NORMAL
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volumes:
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- type: Secret
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secretName: molgenis-pipeline-file-secret
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mountPath: "/home/jenkins/.m2"
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Containers:
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EnvVars:
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- type: Secret
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key: PGP_PASSPHRASE
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secretName: molgenis-pipeline-env-secret
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secretKey: pgpPassphrase
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- type: KeyValue
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key: PGP_SECRETKEY
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value: "keyfile:/home.jenkins/.m2/key.asc"
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- type: KeyValue
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key: npm_config_registry
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value: "http://nexus.molgenis-nexus:8081/repository/npm-central/"
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- type: Secret
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key: SONAR_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: sonarToken
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- type: Secret
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key: CODECOV_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: codecovToken
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- type: Secret
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key: GITHUB_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: githubToken
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NodeSelector: {}
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node:
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node:
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Label: node-carbon
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Label: node-carbon
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NodeUsageMode: EXCLUSIVE
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NodeUsageMode: EXCLUSIVE
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@ -461,155 +428,45 @@ jenkins:
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Command: cat
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Command: cat
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WorkingDir: /home/jenkins
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WorkingDir: /home/jenkins
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TTY: true
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TTY: true
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vault:
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Image: "vault"
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Command: cat
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WorkingDir: /home/jenkins
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TTY: true
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EnvVars:
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EnvVars:
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- type: KeyValue
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key: npm_config_registry
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value: "http://nexus.molgenis-nexus:8081/repository/npm-central/"
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- type: Secret
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- type: Secret
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key: CODECOV_TOKEN
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key: VAULT_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretName: molgenis-pipeline-vault-secret
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secretKey: codecovToken
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secretKey: token
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- type: Secret
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- type: Secret
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key: GITHUB_TOKEN
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key: VAULT_SKIP_VERIFY
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secretName: molgenis-pipeline-env-secret
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secretName: molgenis-pipeline-vault-secret
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secretKey: githubToken
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secretKey: skipVerify
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- type: Secret
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- type: Secret
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key: NPM_TOKEN
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key: VAULT_ADDR
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secretName: molgenis-pipeline-env-secret
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secretName: molgenis-pipeline-vault-secret
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secretKey: npmToken
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secretKey: addr
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NodeSelector: {}
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NodeSelector: {}
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molgenis-it:
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#secret contains configuration for the kubernetes secrets that jenkins can access
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InheritFrom: molgenis
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secret:
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Label: molgenis-it
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# vault configures the vault secret
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NodeUsageMode: EXCLUSIVE
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vault:
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Containers:
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token: xxxx
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elasticsearch:
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addr: "https://vault-operator.vault-operator.svc:8200"
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||||||
Image: docker.elastic.co/elasticsearch/elasticsearch
|
skipVerify: "1"
|
||||||
ImageTag: 5.5.3
|
# githubToken contains access token for jenkins bot account on github.com
|
||||||
resources:
|
gitHub:
|
||||||
requests:
|
user: "molgenis-jenkins"
|
||||||
cpu: "100m"
|
token: xxxx
|
||||||
memory: "1Gi"
|
# gogs contains access token for jenkins bot account on RuG GoGs
|
||||||
limits:
|
gogs:
|
||||||
cpu: "1"
|
user: p281392
|
||||||
memory: "1500Mi"
|
token: xxxx
|
||||||
EnvVars:
|
# registry contains credentials for registry.molgenis.org
|
||||||
- type: KeyValue
|
registry:
|
||||||
key: ES_JAVA_OPTS
|
user: admin
|
||||||
value: "-Xms512m -Xmx512m"
|
password: xxxx
|
||||||
- type: KeyValue
|
# dockerHubPassword contains password for hub.docker.com
|
||||||
key: cluster.name
|
dockerHub:
|
||||||
value: molgenis
|
user: molgenisci
|
||||||
- type: KeyValue
|
password: xxxx
|
||||||
key: bootstrap.memory_lock
|
|
||||||
value: "true"
|
|
||||||
- type: KeyValue
|
|
||||||
key: xpack.security.enabled
|
|
||||||
value: "false"
|
|
||||||
- type: KeyValue
|
|
||||||
key: discovery.type
|
|
||||||
value: single-node
|
|
||||||
postgres:
|
|
||||||
Image: postgres
|
|
||||||
ImageTag: 9.6-alpine
|
|
||||||
resources:
|
|
||||||
requests:
|
|
||||||
cpu: "100m"
|
|
||||||
memory: "250Mi"
|
|
||||||
limits:
|
|
||||||
cpu: "1"
|
|
||||||
memory: "250Mi"
|
|
||||||
EnvVars:
|
|
||||||
- type: KeyValue
|
|
||||||
key: POSTGRES_USER
|
|
||||||
value: molgenis
|
|
||||||
- type: KeyValue
|
|
||||||
key: POSTGRES_PASSWORD
|
|
||||||
value: molgenis
|
|
||||||
- type: KeyValue
|
|
||||||
key: POSTGRES_DB
|
|
||||||
value: molgenis
|
|
||||||
opencpu:
|
|
||||||
Image: molgenis/opencpu
|
|
||||||
AlwaysPullImage: true
|
|
||||||
resources:
|
|
||||||
requests:
|
|
||||||
cpu: "100m"
|
|
||||||
memory: "256Mi"
|
|
||||||
limits:
|
|
||||||
cpu: "1"
|
|
||||||
memory: "512Mi"
|
|
||||||
NodeSelector: {}
|
|
||||||
PipelineSecrets:
|
|
||||||
Vault:
|
|
||||||
Replace: true
|
|
||||||
Token: xxxx
|
|
||||||
Addr: "https://vault-operator.vault-operator.svc:8200"
|
|
||||||
SkipVerify: 1
|
|
||||||
Env:
|
|
||||||
# Set to false to keep existing secret
|
|
||||||
Replace: true
|
|
||||||
# Passphrase for the pgp private key file, prefixed with literal:
|
|
||||||
PGPPassphrase: literal:xxxx
|
|
||||||
# Token for codecov.io service
|
|
||||||
CodecovToken: xxxx
|
|
||||||
# Token for github bot account
|
|
||||||
GitHubToken: xxxx
|
|
||||||
# Token for github bot account
|
|
||||||
GogsToken: xxxx
|
|
||||||
# Token for sonarcloud.io
|
|
||||||
SonarToken: xxxx
|
|
||||||
# Token for npmjs.org
|
|
||||||
NpmToken: xxxx
|
|
||||||
# Password Local NEXUS
|
|
||||||
NexusPassword: xxxx
|
|
||||||
# Password hub.docker.com
|
|
||||||
DockerHubPassword: xxxx
|
|
||||||
# Access key for saucelabs.com
|
|
||||||
SauceAccessKey: xxxx
|
|
||||||
File:
|
|
||||||
# Set to false to keep existing secret
|
|
||||||
Replace: true
|
|
||||||
# PGP Private key in ascii format used to sign artifacts
|
|
||||||
PGPPrivateKeyAsc: |-
|
|
||||||
-----BEGIN PGP PRIVATE KEY BLOCK-----
|
|
||||||
xxxxx
|
|
||||||
-----END PGP PRIVATE KEY BLOCK-----
|
|
||||||
# maven.settings file
|
|
||||||
MavenSettingsXML: |-
|
|
||||||
<settings>
|
|
||||||
<localRepository>${user.home}/.mvnrepository</localRepository>
|
|
||||||
<interactiveMode>false</interactiveMode>
|
|
||||||
<mirrors>
|
|
||||||
<mirror>
|
|
||||||
<id>nexus</id>
|
|
||||||
<mirrorOf>external:*</mirrorOf>
|
|
||||||
<url>http://nexus.molgenis-nexus:8081/repository/maven-central/</url>
|
|
||||||
</mirror>
|
|
||||||
</mirrors>
|
|
||||||
<servers>
|
|
||||||
<!-- for snapshot builds of the master -->
|
|
||||||
<server>
|
|
||||||
<id>sonatype-nexus-staging</id>
|
|
||||||
<username>molgenis</username>
|
|
||||||
<password>xxxx</password>
|
|
||||||
</server>
|
|
||||||
<server>
|
|
||||||
<id>local-nexus</id>
|
|
||||||
<url>http://nexus.molgenis-nexus:8081/repository/maven-snapshots/</url>
|
|
||||||
<username>admin</username>
|
|
||||||
<password>xxxxx</password>
|
|
||||||
</server>
|
|
||||||
<!-- for docker images-->
|
|
||||||
<server>
|
|
||||||
<id>registry.molgenis.org</id>
|
|
||||||
<username>admin</username>
|
|
||||||
<password>xxxx</password>
|
|
||||||
</server>
|
|
||||||
<server>
|
|
||||||
<id>registry.hub.docker.com</id>
|
|
||||||
<username>molgenisci</username>
|
|
||||||
<password>xxxx</password>
|
|
||||||
</server>
|
|
||||||
</servers>
|
|
||||||
</settings>
|
|
||||||
Loading…
Reference in New Issue