Merge branch 'master' of https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-helm

README.md

@@ -1,8 +1,14 @@
 # MOLGENIS Helm templates
 
+These are the Helm templates that we will use for MOLGENIS operations. There are some prerequisites you need.
 
+- docker
+- minikube
+ 
 ## Useful commands for Kubernetes
 
+Commands that can be used to get information from a kubernetes cluster
+
 - kubectl get pods
   Gets alls running instances of containers from a certain deployment
 - kubectl get services
@@ -14,6 +20,14 @@
 - kubectl get deployments
   Gets all deployments (comparable with docker-compose)
 
+When you want to see what is running on the clusters at the CIT you have to make a context switch.
+You can access the cluster with kubeconfig-files. You can obtain these by downloading them from the 
+MOLGENIS kubernetes cluster.
+
+- Goto https://rancher.molgenis.org:7443
+- Goto 
+
+
 ## Useful commands for Helm
 
 - helm install .

nexus/v0.1.x/templates/deployments/nexus-deployment.yaml

@@ -24,6 +24,13 @@ spec:
         persistentVolumeClaim:
           claimName: molgenis-nexus-data
       restartPolicy: {{ .Values.nexus.restartPolicy }}
+      initContainers:
+      - name: volume-mount-nexus
+        image: busybox
+        command: ["sh", "-c", "chown -R 200:200 /gcc/molgenis/nexus"]
+        volumeMounts:
+        - name: molgenis-nexus-data
+          mountPath: "/nexus-data"
       containers:
       - name: {{ .Values.nexus.name }}
         image: "{{ .Values.nexus.image.repository }}:{{ .Values.nexus.image.tag }}"

nexus/v0.1.x/templates/volumes/nexus-pv.yaml

@@ -13,4 +13,4 @@ spec:
   persistentVolumeReclaimPolicy: Retain
   nfs:
     server: 192.168.64.12
-    path: /gcc/molgenis/nexus-data
+    path: /gcc/molgenis/nexus