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12
README.md
12
README.md
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@ -104,7 +104,6 @@ This repository is serves also as a catalogue for Rancher. We have serveral apps
|
||||||
- [Jenkins](molgenis-jenkins/README.md)
|
- [Jenkins](molgenis-jenkins/README.md)
|
||||||
- [NEXUS](molgenis-nexus/README.md)
|
- [NEXUS](molgenis-nexus/README.md)
|
||||||
- [HTTPD](molgenis-httpd/README.md)
|
- [HTTPD](molgenis-httpd/README.md)
|
||||||
- [MOLNIGES preview](molgenis-preview/README.md)
|
|
||||||
|
|
||||||
### Useful commands
|
### Useful commands
|
||||||
You can you need to know to easily develop and deploy helm-charts
|
You can you need to know to easily develop and deploy helm-charts
|
||||||
|
@ -117,7 +116,7 @@ You can you need to know to easily develop and deploy helm-charts
|
||||||
|
|
||||||
Check if your configuration deploys on a kubernetes cluster and check the configuration
|
Check if your configuration deploys on a kubernetes cluster and check the configuration
|
||||||
|
|
||||||
- ```helm install . #release name# --namespace #remote namespace#```
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- ```helm install .```
|
||||||
|
|
||||||
Do it in the root of the project where the Chart.yaml is located
|
Do it in the root of the project where the Chart.yaml is located
|
||||||
It installs a release of a kubernetes stack. You also store this as an artifact in a kubernetes repository
|
It installs a release of a kubernetes stack. You also store this as an artifact in a kubernetes repository
|
||||||
|
@ -128,12 +127,3 @@ You can you need to know to easily develop and deploy helm-charts
|
||||||
|
|
||||||
Performs a sort of mvn clean on your workspace. Very handy for zombie persistent volumes or claims.
|
Performs a sort of mvn clean on your workspace. Very handy for zombie persistent volumes or claims.
|
||||||
|
|
||||||
- ```install tiller on remote cluster```
|
|
||||||
|
|
||||||
To install tiller on a remote cluster you need an rbac-config.yml.
|
|
||||||
```kubectl create -f rbac-config.yaml```
|
|
||||||
|
|
||||||
When you have defined the yaml you can add the tiller to the cluster by following the steps below.
|
|
||||||
```helm init --service-account tiller```
|
|
||||||
|
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@ metadata:
|
||||||
labels:
|
labels:
|
||||||
app: {{ .Values.httpd.name }}
|
app: {{ .Values.httpd.name }}
|
||||||
spec:
|
spec:
|
||||||
type: {{ .Values.httpd.service.type }}
|
type: NodePort
|
||||||
ports:
|
ports:
|
||||||
- name: {{ .Values.httpd.name }}
|
- name: {{ .Values.httpd.name }}
|
||||||
port: {{ .Values.httpd.port }}
|
port: {{ .Values.httpd.port }}
|
||||||
|
|
|
@ -5,7 +5,7 @@ metadata:
|
||||||
labels:
|
labels:
|
||||||
app: {{ .Values.nexus.name }}
|
app: {{ .Values.nexus.name }}
|
||||||
spec:
|
spec:
|
||||||
type: {{ .Values.nexus.service.type }}
|
type: ClusterIP
|
||||||
ports:
|
ports:
|
||||||
- name: ui
|
- name: ui
|
||||||
port: {{ .Values.nexus.port.ui }}
|
port: {{ .Values.nexus.port.ui }}
|
||||||
|
|
|
@ -6,6 +6,10 @@ replicaCount: 1
|
||||||
|
|
||||||
environment: production
|
environment: production
|
||||||
|
|
||||||
|
service:
|
||||||
|
type: NodePort
|
||||||
|
port: 80
|
||||||
|
|
||||||
nexus:
|
nexus:
|
||||||
name: nexus
|
name: nexus
|
||||||
strategy:
|
strategy:
|
||||||
|
@ -21,8 +25,6 @@ nexus:
|
||||||
ui: 8081
|
ui: 8081
|
||||||
path:
|
path:
|
||||||
dockerV2: v2
|
dockerV2: v2
|
||||||
service:
|
|
||||||
type: ClusterIP
|
|
||||||
|
|
||||||
httpd:
|
httpd:
|
||||||
name: httpd
|
name: httpd
|
||||||
|
@ -36,8 +38,6 @@ httpd:
|
||||||
tag: lts
|
tag: lts
|
||||||
pullPolicy: Always
|
pullPolicy: Always
|
||||||
port: 80
|
port: 80
|
||||||
service:
|
|
||||||
type: LoadBalancer
|
|
||||||
|
|
||||||
|
|
||||||
ingress:
|
ingress:
|
||||||
|
|
|
@ -1,21 +0,0 @@
|
||||||
# Patterns to ignore when building packages.
|
|
||||||
# This supports shell glob matching, relative path matching, and
|
|
||||||
# negation (prefixed with !). Only one pattern per line.
|
|
||||||
.DS_Store
|
|
||||||
# Common VCS dirs
|
|
||||||
.git/
|
|
||||||
.gitignore
|
|
||||||
.bzr/
|
|
||||||
.bzrignore
|
|
||||||
.hg/
|
|
||||||
.hgignore
|
|
||||||
.svn/
|
|
||||||
# Common backup files
|
|
||||||
*.swp
|
|
||||||
*.bak
|
|
||||||
*.tmp
|
|
||||||
*~
|
|
||||||
# Various IDEs
|
|
||||||
.project
|
|
||||||
.idea/
|
|
||||||
*.tmproj
|
|
|
@ -1,5 +0,0 @@
|
||||||
apiVersion: v1
|
|
||||||
appVersion: "1.0"
|
|
||||||
description: A Helm chart for Kubernetes
|
|
||||||
name: molgenis
|
|
||||||
version: 0.1.0
|
|
|
@ -1,11 +0,0 @@
|
||||||
# MOLGENIS preview
|
|
||||||
Is used for integration testing purposes.
|
|
||||||
|
|
||||||
## Containers
|
|
||||||
This chart spins up a complete stack to run MOLGENIS. The created containers are:
|
|
||||||
|
|
||||||
- MOLGENIS
|
|
||||||
- PostgreSQL
|
|
||||||
- Elasticsearch
|
|
||||||
- OpenCPU
|
|
||||||
|
|
|
@ -1,19 +0,0 @@
|
||||||
1. Get the application URL by running these commands:
|
|
||||||
{{- if .Values.ingress.enabled }}
|
|
||||||
{{- range .Values.ingress.hosts }}
|
|
||||||
http{{ if $.Values.ingress.tls }}s{{ end }}://{{ . }}{{ $.Values.ingress.path }}
|
|
||||||
{{- end }}
|
|
||||||
{{- else if contains "NodePort" .Values.service.type }}
|
|
||||||
export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ template "molgenis.fullname" . }})
|
|
||||||
export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
|
|
||||||
echo http://$NODE_IP:$NODE_PORT
|
|
||||||
{{- else if contains "LoadBalancer" .Values.service.type }}
|
|
||||||
NOTE: It may take a few minutes for the LoadBalancer IP to be available.
|
|
||||||
You can watch the status of by running 'kubectl get svc -w {{ template "molgenis.fullname" . }}'
|
|
||||||
export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ template "molgenis.fullname" . }} -o jsonpath='{.status.loadBalancer.ingress[0].ip}')
|
|
||||||
echo http://$SERVICE_IP:{{ .Values.service.port }}
|
|
||||||
{{- else if contains "ClusterIP" .Values.service.type }}
|
|
||||||
export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app={{ template "molgenis.name" . }},release={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
|
|
||||||
echo "Visit http://127.0.0.1:8080 to use your application"
|
|
||||||
kubectl port-forward $POD_NAME 8080:80
|
|
||||||
{{- end }}
|
|
|
@ -1,32 +0,0 @@
|
||||||
{{/* vim: set filetype=mustache: */}}
|
|
||||||
{{/*
|
|
||||||
Expand the name of the chart.
|
|
||||||
*/}}
|
|
||||||
{{- define "molgenis.name" -}}
|
|
||||||
{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
|
|
||||||
{{- end -}}
|
|
||||||
|
|
||||||
{{/*
|
|
||||||
Create a default fully qualified app name.
|
|
||||||
We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
|
|
||||||
If release name contains chart name it will be used as a full name.
|
|
||||||
*/}}
|
|
||||||
{{- define "molgenis.fullname" -}}
|
|
||||||
{{- if .Values.fullnameOverride -}}
|
|
||||||
{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
|
|
||||||
{{- else -}}
|
|
||||||
{{- $name := default .Chart.Name .Values.nameOverride -}}
|
|
||||||
{{- if contains $name .Release.Name -}}
|
|
||||||
{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
|
|
||||||
{{- else -}}
|
|
||||||
{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
|
|
||||||
{{- end -}}
|
|
||||||
{{- end -}}
|
|
||||||
{{- end -}}
|
|
||||||
|
|
||||||
{{/*
|
|
||||||
Create chart name and version as used by the chart label.
|
|
||||||
*/}}
|
|
||||||
{{- define "molgenis.chart" -}}
|
|
||||||
{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
|
|
||||||
{{- end -}}
|
|
|
@ -1,120 +0,0 @@
|
||||||
apiVersion: apps/v1beta2
|
|
||||||
kind: Deployment
|
|
||||||
metadata:
|
|
||||||
name: {{ template "molgenis.fullname" . }}
|
|
||||||
labels:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
chart: {{ template "molgenis.chart" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
||||||
heritage: {{ .Release.Service }}
|
|
||||||
spec:
|
|
||||||
replicas: {{ .Values.replicaCount }}
|
|
||||||
selector:
|
|
||||||
matchLabels:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
||||||
template:
|
|
||||||
metadata:
|
|
||||||
labels:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
||||||
spec:
|
|
||||||
containers:
|
|
||||||
- name: molgenis
|
|
||||||
{{- with .Values.molgenis }}
|
|
||||||
image: "{{ .image.repository }}:{{ .image.tag }}"
|
|
||||||
imagePullPolicy: {{ .image.pullPolicy }}
|
|
||||||
env:
|
|
||||||
- name: molgenis.home
|
|
||||||
value: /home/molgenis
|
|
||||||
- name: opencpu.uri.host
|
|
||||||
value: localhost
|
|
||||||
- name: elasticsearch.transport.addresses
|
|
||||||
value: localhost:9300
|
|
||||||
- name: elasticsearch.cluster.name
|
|
||||||
value: {{ $.Values.elasticsearch.clusterName }}
|
|
||||||
- name: db_uri
|
|
||||||
value: "jdbc:postgresql://localhost/{{ $.Values.postgres.db }}"
|
|
||||||
- name: db_user
|
|
||||||
value: {{ $.Values.postgres.user }}
|
|
||||||
- name: db_password
|
|
||||||
value: {{ $.Values.postgres.password }}
|
|
||||||
- name: admin.password
|
|
||||||
value: {{ .adminPassword }}
|
|
||||||
- name: CATALINA_OPTS
|
|
||||||
value: "{{ .javaOpts }}"
|
|
||||||
ports:
|
|
||||||
- containerPort: 8080
|
|
||||||
# livenessProbe:
|
|
||||||
# httpGet:
|
|
||||||
# path: /
|
|
||||||
# port: 8080
|
|
||||||
# readinessProbe:
|
|
||||||
# httpGet:
|
|
||||||
# path: /api/v2/version
|
|
||||||
# port: 8080
|
|
||||||
resources:
|
|
||||||
{{ toYaml .resources | indent 12 }}
|
|
||||||
{{- end }}
|
|
||||||
|
|
||||||
- name: elasticsearch
|
|
||||||
{{- with .Values.elasticsearch }}
|
|
||||||
image: "{{ .image.repository }}:{{ .image.tag }}"
|
|
||||||
imagePullPolicy: {{ .image.pullPolicy }}
|
|
||||||
env:
|
|
||||||
- name: cluster.name
|
|
||||||
value: {{ .clusterName }}
|
|
||||||
- name: bootstrap.memory_lock
|
|
||||||
value: "true"
|
|
||||||
- name: ES_JAVA_OPTS
|
|
||||||
value: "{{ .javaOpts }}"
|
|
||||||
- name: xpack.security.enabled
|
|
||||||
value: "false"
|
|
||||||
- name: discovery.type
|
|
||||||
value: single-node
|
|
||||||
ports:
|
|
||||||
- containerPort: 9200
|
|
||||||
- containerPort: 9300
|
|
||||||
resources:
|
|
||||||
{{ toYaml .resources | indent 12 }}
|
|
||||||
{{- end }}
|
|
||||||
|
|
||||||
- name: postgres
|
|
||||||
{{- with .Values.postgres }}
|
|
||||||
image: "{{ .image.repository }}:{{ .image.tag }}"
|
|
||||||
imagePullPolicy: {{ .image.pullPolicy }}
|
|
||||||
env:
|
|
||||||
- name: POSTGRES_USER
|
|
||||||
value: {{ .user }}
|
|
||||||
- name: POSTGRES_PASSWORD
|
|
||||||
value: {{ .password }}
|
|
||||||
- name: POSTGRES_DB
|
|
||||||
value: {{ .db }}
|
|
||||||
ports:
|
|
||||||
- containerPort: 5432
|
|
||||||
resources:
|
|
||||||
{{ toYaml .resources | indent 12 }}
|
|
||||||
{{- end }}
|
|
||||||
|
|
||||||
- name: opencpu
|
|
||||||
{{- with .Values.opencpu }}
|
|
||||||
image: "{{ .image.repository }}:{{ .image.tag }}"
|
|
||||||
imagePullPolicy: {{ .image.pullPolicy }}
|
|
||||||
ports:
|
|
||||||
- containerPort: 8004
|
|
||||||
resources:
|
|
||||||
{{ toYaml .resources | indent 12 }}
|
|
||||||
{{- end }}
|
|
||||||
|
|
||||||
{{- with .Values.nodeSelector }}
|
|
||||||
nodeSelector:
|
|
||||||
{{ toYaml . | indent 8 }}
|
|
||||||
{{- end }}
|
|
||||||
{{- with .Values.affinity }}
|
|
||||||
affinity:
|
|
||||||
{{ toYaml . | indent 8 }}
|
|
||||||
{{- end }}
|
|
||||||
{{- with .Values.tolerations }}
|
|
||||||
tolerations:
|
|
||||||
{{ toYaml . | indent 8 }}
|
|
||||||
{{- end }}
|
|
|
@ -1,38 +0,0 @@
|
||||||
{{- if .Values.ingress.enabled -}}
|
|
||||||
{{- $fullName := include "molgenis.fullname" . -}}
|
|
||||||
{{- $ingressPath := .Values.ingress.path -}}
|
|
||||||
apiVersion: extensions/v1beta1
|
|
||||||
kind: Ingress
|
|
||||||
metadata:
|
|
||||||
name: {{ $fullName }}
|
|
||||||
labels:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
chart: {{ template "molgenis.chart" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
||||||
heritage: {{ .Release.Service }}
|
|
||||||
{{- with .Values.ingress.annotations }}
|
|
||||||
annotations:
|
|
||||||
{{ toYaml . | indent 4 }}
|
|
||||||
{{- end }}
|
|
||||||
spec:
|
|
||||||
{{- if .Values.ingress.tls }}
|
|
||||||
tls:
|
|
||||||
{{- range .Values.ingress.tls }}
|
|
||||||
- hosts:
|
|
||||||
{{- range .hosts }}
|
|
||||||
- {{ . }}
|
|
||||||
{{- end }}
|
|
||||||
secretName: {{ .secretName }}
|
|
||||||
{{- end }}
|
|
||||||
{{- end }}
|
|
||||||
rules:
|
|
||||||
{{- range .Values.ingress.hosts }}
|
|
||||||
- host: {{ . }}
|
|
||||||
http:
|
|
||||||
paths:
|
|
||||||
- path: {{ $ingressPath }}
|
|
||||||
backend:
|
|
||||||
serviceName: {{ $fullName }}
|
|
||||||
servicePort: 8080
|
|
||||||
{{- end }}
|
|
||||||
{{- end }}
|
|
|
@ -1,17 +0,0 @@
|
||||||
apiVersion: v1
|
|
||||||
kind: Service
|
|
||||||
metadata:
|
|
||||||
name: {{ template "molgenis.fullname" . }}
|
|
||||||
labels:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
chart: {{ template "molgenis.chart" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
||||||
heritage: {{ .Release.Service }}
|
|
||||||
spec:
|
|
||||||
type: {{ .Values.service.type }}
|
|
||||||
ports:
|
|
||||||
- name: molgenis
|
|
||||||
port: {{ .Values.service.port }}
|
|
||||||
selector:
|
|
||||||
app: {{ template "molgenis.name" . }}
|
|
||||||
release: {{ .Release.Name }}
|
|
|
@ -1,120 +0,0 @@
|
||||||
# Source: molgenis/templates/deployment.yaml
|
|
||||||
apiVersion: apps/v1beta2
|
|
||||||
kind: Deployment
|
|
||||||
metadata:
|
|
||||||
name: lanky-ragdoll-molgenis
|
|
||||||
labels:
|
|
||||||
app: molgenis
|
|
||||||
chart: molgenis-0.1.0
|
|
||||||
release: lanky-ragdoll
|
|
||||||
heritage: Tiller
|
|
||||||
spec:
|
|
||||||
replicas: 1
|
|
||||||
selector:
|
|
||||||
matchLabels:
|
|
||||||
app: molgenis
|
|
||||||
release: lanky-ragdoll
|
|
||||||
template:
|
|
||||||
metadata:
|
|
||||||
labels:
|
|
||||||
app: molgenis
|
|
||||||
release: lanky-ragdoll
|
|
||||||
spec:
|
|
||||||
containers:
|
|
||||||
- name: molgenis
|
|
||||||
image: "registry.molgenis.org/molgenis/molgenis-app:latest"
|
|
||||||
imagePullPolicy: Always
|
|
||||||
env:
|
|
||||||
- name: molgenis.home
|
|
||||||
value: /home/molgenis
|
|
||||||
- name: opencpu.uri.host
|
|
||||||
value: opencpu
|
|
||||||
- name: elasticsearch.transport.addresses
|
|
||||||
value: elasticsearch:9300
|
|
||||||
- name: elasticsearch.cluster.name
|
|
||||||
value: molgenis
|
|
||||||
- name: db_uri
|
|
||||||
value: "jdbc:postgresql://postgres/molgenis"
|
|
||||||
- name: db_user
|
|
||||||
value: molgenis
|
|
||||||
- name: db_password
|
|
||||||
value: molgenis
|
|
||||||
- name: admin.password
|
|
||||||
value: admin
|
|
||||||
- name: CATALINA_OPTS
|
|
||||||
value: "-Xmx1g -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
|
|
||||||
ports:
|
|
||||||
- containerPort: 8080
|
|
||||||
livenessProbe:
|
|
||||||
httpGet:
|
|
||||||
path: /
|
|
||||||
port: http
|
|
||||||
readinessProbe:
|
|
||||||
httpGet:
|
|
||||||
path: /api/v2/version
|
|
||||||
port: http
|
|
||||||
resources:
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 1250Mi
|
|
||||||
requests:
|
|
||||||
cpu: 200m
|
|
||||||
memory: 1Gi
|
|
||||||
|
|
||||||
|
|
||||||
- name: elasticsearch
|
|
||||||
image: "docker.elastic.co/elasticsearch/elasticsearch:5.5.3"
|
|
||||||
imagePullPolicy: IfNotPresent
|
|
||||||
env:
|
|
||||||
- name: cluster.name
|
|
||||||
value: molgenis
|
|
||||||
- name: bootstrap.memory_lock
|
|
||||||
value: true
|
|
||||||
- name: ES_JAVA_OPTS
|
|
||||||
value: "-Xms512m -Xmx512m"
|
|
||||||
- name: xpack.security.enabled
|
|
||||||
value: false
|
|
||||||
- name: discovery.type
|
|
||||||
value: single-node
|
|
||||||
ports:
|
|
||||||
- containerPort: 9200
|
|
||||||
- containerPort: 9300
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 1500Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 1Gi
|
|
||||||
|
|
||||||
|
|
||||||
- name: postgres
|
|
||||||
image: "postgres:9.6-alpine"
|
|
||||||
imagePullPolicy: IfNotPresent
|
|
||||||
env:
|
|
||||||
- name: POSTGRES_USER
|
|
||||||
value: molgenis
|
|
||||||
- name: POSTGRES_PASSWORD
|
|
||||||
value: molgenis
|
|
||||||
- name: POSTGRES_DB
|
|
||||||
value: molgenis
|
|
||||||
ports:
|
|
||||||
- containerPort: 5432
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 250Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 250Mi
|
|
||||||
|
|
||||||
|
|
||||||
- name: opencpu
|
|
||||||
image: "molgenis/opencpu:latest"
|
|
||||||
imagePullPolicy: Always
|
|
||||||
ports:
|
|
||||||
- containerPort: 8004
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 512Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 256Mi
|
|
|
@ -1,82 +0,0 @@
|
||||||
# Default values for molgenis.
|
|
||||||
|
|
||||||
replicaCount: 1
|
|
||||||
|
|
||||||
service:
|
|
||||||
type: LoadBalancer
|
|
||||||
port: 8080
|
|
||||||
|
|
||||||
ingress:
|
|
||||||
enabled: true
|
|
||||||
annotations: {}
|
|
||||||
# kubernetes.io/ingress.class: nginx
|
|
||||||
# kubernetes.io/tls-acme: "true"
|
|
||||||
path: /
|
|
||||||
hosts:
|
|
||||||
- test.molgenis.org
|
|
||||||
tls: []
|
|
||||||
|
|
||||||
molgenis:
|
|
||||||
image:
|
|
||||||
repository: registry.molgenis.org/molgenis/molgenis-app
|
|
||||||
tag: 7.0.0-SNAPSHOT
|
|
||||||
pullPolicy: Always
|
|
||||||
adminPassword: admin
|
|
||||||
javaOpts: "-Xmx1g -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled"
|
|
||||||
resources:
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 1250Mi
|
|
||||||
requests:
|
|
||||||
cpu: 200m
|
|
||||||
memory: 1Gi
|
|
||||||
|
|
||||||
postgres:
|
|
||||||
image:
|
|
||||||
repository: postgres
|
|
||||||
tag: 9.6-alpine
|
|
||||||
pullPolicy: IfNotPresent
|
|
||||||
user: molgenis
|
|
||||||
password: molgenis
|
|
||||||
db: molgenis
|
|
||||||
resources:
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 250Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 250Mi
|
|
||||||
|
|
||||||
elasticsearch:
|
|
||||||
image:
|
|
||||||
repository: docker.elastic.co/elasticsearch/elasticsearch
|
|
||||||
tag: 5.5.3
|
|
||||||
pullPolicy: IfNotPresent
|
|
||||||
javaOpts: "-Xms512m -Xmx512m"
|
|
||||||
clusterName: molgenis
|
|
||||||
resources:
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 1500Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 1Gi
|
|
||||||
|
|
||||||
opencpu:
|
|
||||||
image:
|
|
||||||
repository: molgenis/opencpu
|
|
||||||
tag: latest
|
|
||||||
pullPolicy: Always
|
|
||||||
resources:
|
|
||||||
limits:
|
|
||||||
cpu: 1
|
|
||||||
memory: 512Mi
|
|
||||||
requests:
|
|
||||||
cpu: 100m
|
|
||||||
memory: 256Mi
|
|
||||||
|
|
||||||
nodeSelector: {}
|
|
||||||
|
|
||||||
tolerations: []
|
|
||||||
|
|
||||||
affinity: {}
|
|
|
@ -1,18 +0,0 @@
|
||||||
apiVersion: v1
|
|
||||||
kind: ServiceAccount
|
|
||||||
metadata:
|
|
||||||
name: tiller
|
|
||||||
namespace: kube-system
|
|
||||||
---
|
|
||||||
apiVersion: rbac.authorization.k8s.io/v1beta1
|
|
||||||
kind: ClusterRoleBinding
|
|
||||||
metadata:
|
|
||||||
name: tiller
|
|
||||||
roleRef:
|
|
||||||
apiGroup: rbac.authorization.k8s.io
|
|
||||||
kind: ClusterRole
|
|
||||||
name: cluster-admin
|
|
||||||
subjects:
|
|
||||||
- kind: ServiceAccount
|
|
||||||
name: tiller
|
|
||||||
namespace: kube-system
|
|
Loading…
Reference in New Issue