molgenis-nexus/templates/deployments/httpd-deployment.yaml

@@ -0,0 +1,34 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  creationTimestamp: null
+  name: {{ .Values.httpd.name }}
+  labels:
+    app: {{ .Values.httpd.name }}
+    environment: {{ .Values.environment }}
+spec:
+  replicas: {{ .Values.replicaCount }}
+  strategy:
+    type: {{ .Values.httpd.strategy.type }}
+  selector:
+    matchLabels:
+      app: {{ .Values.httpd.selector }}
+  template:
+    metadata:
+      labels:
+        app: {{ .Values.httpd.name }}
+      creationTimestamp: null
+    spec:
+      restartPolicy: {{ .Values.httpd.restartPolicy }}
+      containers:
+      - name: {{ .Values.httpd.name }}
+        image: "{{ .Values.httpd.image.repository }}:{{ .Values.httpd.image.tag }}"
+        imagePullPolicy: {{ .Values.httpd.image.pullPolicy }}
+        env:
+        - name: PROXY_SERVICE
+          value: "{{ .Values.nexus.name }}:{{ .Values.nexus.port.ui }},{{ .Values.nexus.name }}:{{ .Values.nexus.port.docker }}:{{ .Values.nexus.path.dockerV2 }}"
+        - name: SERVER_NAME
+          value: {{ .Values.httpd.hostname }}
+        ports:
+        - containerPort: {{ .Values.httpd.port }}
+        resources: {}

molgenis-nexus/templates/deployments/nexus-deployment.yaml

@@ -19,7 +19,18 @@ spec:
         app: {{ .Values.nexus.name }}
       creationTimestamp: null
     spec:
+      volumes:
+      - name: {{ .Values.persistence.name }}
+        persistentVolumeClaim:
+          claimName: {{ .Values.persistence.name }}
       restartPolicy: {{ .Values.nexus.restartPolicy }}
+      initContainers:
+      - name: volume-mount-nexus
+        image: busybox
+        command: ["sh", "-c", "chown -R 200:200 {{ .Values.persistence.mountPath }}"]
+        volumeMounts:
+        - name: {{ .Values.persistence.name }}
+          mountPath: "{{ .Values.persistence.mountPath }}"
       containers:
       - name: {{ .Values.nexus.name }}
         image: "{{ .Values.nexus.image.repository }}:{{ .Values.nexus.image.tag }}"
@@ -28,31 +39,6 @@ spec:
         - containerPort: {{ .Values.nexus.port.ui }}
         - containerPort: {{ .Values.nexus.port.docker }}
         volumeMounts:
-          - name: molgenis-nexus-nfs
+        - name: {{ .Values.persistence.name }}
           mountPath: "/nexus-data"
-          livenessProbe:
-            httpGet:
-              path: /
-              port: {{ .Values.nexus.port.ui }}
-            initialDelaySeconds: 90
-            periodSeconds: 20
-            failureThreshold: 5
-            successThreshold: 1
-          readinessProbe:
-            httpGet:
-              path: /
-              port: {{ .Values.nexus.port.ui }}
-            initialDelaySeconds: 90
-            periodSeconds: 5
-            failureThreshold: 5
-            successThreshold: 1
 
-      volumes:
-        - name: molgenis-nexus-nfs
-          persistentVolumeClaim:
-            claimName: {{ .Values.persistence.claim }}
-
-    {{- with .Values.nodeSelector }}
-      nodeSelector:
-{{ toYaml . | indent 8 }}
-    {{- end }}

molgenis-nexus/templates/deployments/nexusProxy-deployment.yaml

@@ -1,55 +0,0 @@
-apiVersion: extensions/v1beta1
-kind: Deployment
-metadata:
-  creationTimestamp: null
-  name: {{ .Values.nexusProxy.name }}
-  labels:
-    app: {{ .Values.nexusProxy.name }}
-    environment: {{ .Values.environment }}
-spec:
-  replicas: {{ .Values.replicaCount }}
-  strategy:
-    type: {{ .Values.nexusProxy.strategy.type }}
-  selector:
-    matchLabels:
-      app: {{ .Values.nexusProxy.selector }}
-  template:
-    metadata:
-      labels:
-        app: {{ .Values.nexusProxy.name }}
-      creationTimestamp: null
-    spec:
-      restartPolicy: {{ .Values.nexusProxy.restartPolicy }}
-      containers:
-      - name: {{ .Values.nexusProxy.name }}
-        image: "{{ .Values.nexusProxy.image.repository }}:{{ .Values.nexusProxy.image.tag }}"
-        imagePullPolicy: {{ .Values.nexusProxy.image.pullPolicy }}
-        env:
-        - name: PROXY_SERVICE
-          value: "{{ .Values.nexus.name }}:{{ .Values.nexus.port.ui }},{{ .Values.nexus.name }}:{{ .Values.nexus.port.docker }}:{{ .Values.nexus.path.dockerV2 }}"
-        - name: SERVER_NAME
-          value: {{ .Values.nexusProxy.hostname }}
-        ports:
-        - containerPort: {{ .Values.nexusProxy.port }}
-        resources: {}
-        livenessProbe:
-          httpGet:
-            path: /
-            port: {{ .Values.nexusProxy.port }}
-          initialDelaySeconds: 90
-          periodSeconds: 5
-          failureThreshold: 5
-          successThreshold: 1
-        readinessProbe:
-          httpGet:
-            path: /
-            port: {{ .Values.nexusProxy.port }}
-          initialDelaySeconds: 90
-          periodSeconds: 5
-          failureThreshold: 5
-          successThreshold: 1
-
-    {{- with .Values.nodeSelector }}
-      nodeSelector:
-{{ toYaml . | indent 8 }}
-    {{- end }}

molgenis-nexus/templates/ingress.yaml

@@ -25,8 +25,8 @@ spec:
       paths:
         - path: {{ default "/" .path }}
           backend:
-            serviceName: {{ $.Values.nexusProxy.name }}
+            serviceName: httpd
-            servicePort: {{ $.Values.nexusProxy.port }}
+            servicePort: 80
 {{- if .tls }}
   tls:
   - hosts:

molgenis-nexus/templates/persistence/nexusPVC.yaml

@@ -1,15 +0,0 @@
-{{- if .Values.persistence.enabled -}}
-apiVersion: extensions/v1beta1
-kind: PersistentVolumeClaim
-apiVersion: v1
-metadata:
-  name: {{ .Values.persistence.claim }}
-  annotations:
-    volume.beta.kubernetes.io/storage-class: "nfs-provisioner-retain"
-spec:
-  accessModes:
-    - ReadWriteMany
-  resources:
-    requests:
-      storage: {{ .Values.persistence.size }}
-{{- end }}

molgenis-nexus/templates/services/httpd-service.yaml

@@ -0,0 +1,13 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ .Values.httpd.name }}
+  labels:
+    app: {{ .Values.httpd.name }}
+spec:
+  type: {{ .Values.httpd.service.type }}
+  ports:
+  - name: {{ .Values.httpd.name }}
+    port: {{ .Values.httpd.port }}
+  selector:
+    app: {{ .Values.httpd.selector }}

molgenis-nexus/templates/services/nexusProxy-service.yaml

@@ -1,13 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: {{ .Values.nexusProxy.name }}
-  labels:
-    app: {{ .Values.nexusProxy.name }}
-spec:
-  type: {{ .Values.nexusProxy.service.type }}
-  ports:
-  - name: {{ .Values.nexusProxy.name }}
-    port: {{ .Values.nexusProxy.port }}
-  selector:
-    app: {{ .Values.nexusProxy.selector }}

molgenis-nexus/templates/volumes/nexus-pv.yaml

@@ -0,0 +1,16 @@
+apiVersion: v1
+kind: PersistentVolume
+metadata:
+  name: {{ .Values.persistence.name }}
+  labels:
+    name: nfs2
+spec:
+  storageClassName: {{ .Values.persistence.storageClass }}
+  capacity:
+    storage: {{ .Values.persistence.size }}
+  accessModes:
+    - {{ .Values.persistence.accessMode }}
+  persistentVolumeReclaimPolicy: {{ .Values.persistence.reclaimPolicy }}
+  nfs:
+    server: {{ .Values.persistence.server }}
+    path: {{ .Values.persistence.mountPath }}

molgenis-nexus/templates/volumes/nexus-pvc.yaml

@@ -0,0 +1,11 @@
+kind: PersistentVolumeClaim
+apiVersion: v1
+metadata:
+  name: {{ .Values.persistence.name }}
+spec:
+  storageClassName: {{ .Values.persistence.storageClass }}
+  accessModes:
+    - {{ .Values.persistence.accessMode }}
+  resources:
+    requests:
+      storage: {{ .Values.persistence.size }}

molgenis-nexus/values.yaml

@@ -24,12 +24,12 @@ nexus:
   service:
     type: ClusterIP
 
-nexusProxy:
+httpd:
-  name: nexus-proxy
+  name: httpd
   hostname: registry.molgenis.org
   strategy:
     type: Recreate
-  selector: nexus-proxy
+  selector: httpd
   restartPolicy: Always
   image:
     repository: registry.webhosting.rug.nl/molgenis/httpd
@@ -43,22 +43,39 @@ nexusProxy:
 ingress:
   enabled: true
   annotations: {}
+    # kubernetes.io/ingress.class: nginx
+    # kubernetes.io/tls-acme: "true"
   path: /
   hosts:
   - name: registry.molgenis.org
   tls: []
+  #  - secretName: chart-example-tls
+  #    hosts:
+  #      - chart-example.local
 
 persistence:
-  enabled: true
+  name: molgenis-nexus-data
-  claim: molgenis-nexus
+  storageClass: nfs-class
-  size: 500Gi
+  size: 30G
+  reclaimPolicy: Retain
+  server: 192.168.64.12
+  accessMode: ReadWriteMany
+  mountPath: /gcc/molgenis/nexus
 
 
 resources: {}
+  # We usually recommend not to specify default resources and to leave this as a conscious
+  # choice for the user. This also increases chances charts run on environments with little
+  # resources, such as Minikube. If you do want to specify resources, uncomment the following
+  # lines, adjust them as necessary, and remove the curly braces after 'resources:'.
+  # limits:
+  #  cpu: 100m
+  #  memory: 128Mi
+  # requests:
+  #  cpu: 100m
+  #  memory: 128Mi
 
-nodeSelector: {
+nodeSelector: {}
-  deployPod: "true"
-}
 
 tolerations: []