chore(molgenis-jenkins): Configure extra traits for molgenis github source

molgenis-jenkins/resources/README.md

@@ -0,0 +1,6 @@
+To be able to run helm inside a jenkins pod, you'll need to 
+* create a role in the namespace where tiller is installed
+* bind that role to the user that jenkins pods run as
+
+This directory contains yaml for these resources.
+See also https://github.com/helm/helm/blob/master/docs/rbac.md

molgenis-jenkins/resources/jenkins-default-tiller-user-rolebinding.yaml

@@ -0,0 +1,13 @@
+apiVersion: rbac.authorization.k8s.io/v1beta1
+kind: RoleBinding
+metadata:
+  name: tiller-jenkins-binding
+  namespace: kube-system
+roleRef:
+  apiGroup: rbac.authorization.k8s.io
+  kind: Role
+  name: tiller-user
+subjects:
+- kind: ServiceAccount
+  name: default
+  namespace: molgenis-jenkins

molgenis-jenkins/resources/tiller-user-role.yaml

@@ -0,0 +1,18 @@
+apiVersion: rbac.authorization.k8s.io/v1beta1
+kind: Role
+metadata:
+  name: tiller-user
+  namespace: kube-system
+rules:
+- apiGroups:
+  - ""
+  resources:
+  - pods/portforward
+  verbs:
+  - create
+- apiGroups:
+  - ""
+  resources:
+  - pods
+  verbs:
+  - list

molgenis-jenkins/values.yaml

@@ -82,6 +82,17 @@ jenkins:
                   <strategyId>1</strategyId>
                   <trust class="org.jenkinsci.plugins.github_branch_source.ForkPullRequestDiscoveryTrait$TrustPermission"/>
                 </org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
+                <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                  <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                    <localBranch>**</localBranch>
+                  </extension>
+                </jenkins.plugins.git.traits.LocalBranchTrait>
+                <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                  <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                    <name>MOLGENIS Jenkins</name>
+                    <email>molgenis+ci@gmail.com</email>
+                  </extension>
+                </jenkins.plugins.git.traits.UserIdentityTrait>
               </traits>
             </org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator>
           </navigators>
@@ -131,6 +142,17 @@ jenkins:
                   <credentialsId>molgenis-jenkins-gogs-secret</credentialsId>
                   <traits>
                     <jenkins.plugins.git.traits.BranchDiscoveryTrait/>
+                    <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                        <localBranch>**</localBranch>
+                      </extension>
+                    </jenkins.plugins.git.traits.LocalBranchTrait>
+                    <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                        <name>MOLGENIS Jenkins</name>
+                        <email>molgenis+ci@gmail.com</email>
+                      </extension>
+                    </jenkins.plugins.git.traits.UserIdentityTrait>
                   </traits>
                 </source>
                 <strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
@@ -184,6 +206,17 @@ jenkins:
                   <credentialsId>molgenis-jenkins-gogs-secret</credentialsId>
                   <traits>
                     <jenkins.plugins.git.traits.BranchDiscoveryTrait/>
+                    <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                        <localBranch>**</localBranch>
+                      </extension>
+                    </jenkins.plugins.git.traits.LocalBranchTrait>
+                    <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                        <name>MOLGENIS Jenkins</name>
+                        <email>molgenis+ci@gmail.com</email>
+                      </extension>
+                    </jenkins.plugins.git.traits.UserIdentityTrait>
                   </traits>
                 </source>
                 <strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
@@ -237,6 +270,17 @@ jenkins:
                   <credentialsId>molgenis-jenkins-gogs-secret</credentialsId>
                   <traits>
                     <jenkins.plugins.git.traits.BranchDiscoveryTrait/>
+                    <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                        <localBranch>**</localBranch>
+                      </extension>
+                    </jenkins.plugins.git.traits.LocalBranchTrait>
+                    <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                        <name>MOLGENIS Jenkins</name>
+                        <email>molgenis+ci@gmail.com</email>
+                      </extension>
+                    </jenkins.plugins.git.traits.UserIdentityTrait>
                   </traits>
                 </source>
                 <strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
@@ -290,6 +334,17 @@ jenkins:
                   <credentialsId>molgenis-jenkins-gogs-secret</credentialsId>
                   <traits>
                     <jenkins.plugins.git.traits.BranchDiscoveryTrait/>
+                    <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                        <localBranch>**</localBranch>
+                      </extension>
+                    </jenkins.plugins.git.traits.LocalBranchTrait>
+                    <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                        <name>MOLGENIS Jenkins</name>
+                        <email>molgenis+ci@gmail.com</email>
+                      </extension>
+                    </jenkins.plugins.git.traits.UserIdentityTrait>
                   </traits>
                 </source>
                 <strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
@@ -343,6 +398,17 @@ jenkins:
                   <credentialsId>molgenis-jenkins-gogs-secret</credentialsId>
                   <traits>
                     <jenkins.plugins.git.traits.BranchDiscoveryTrait/>
+                    <jenkins.plugins.git.traits.LocalBranchTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.LocalBranch">
+                        <localBranch>**</localBranch>
+                      </extension>
+                    </jenkins.plugins.git.traits.LocalBranchTrait>
+                    <jenkins.plugins.git.traits.UserIdentityTrait plugin="git@3.9.1">
+                      <extension class="hudson.plugins.git.extensions.impl.UserIdentity">
+                        <name>MOLGENIS Jenkins</name>
+                        <email>molgenis+ci@gmail.com</email>
+                      </extension>
+                    </jenkins.plugins.git.traits.UserIdentityTrait>
                   </traits>
                 </source>
                 <strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
@@ -416,6 +482,12 @@ jenkins:
               key: VAULT_ADDR
               secretName: molgenis-pipeline-vault-secret
               secretKey: addr
+        helm:
+          Image: "lachlanevenson/k8s-helm"
+          ImageTag: "v2.10.0"
+          Command: cat
+          WorkingDir: /home/jenkins
+          TTY: true
       NodeSelector: {}
     node:
       Label: node-carbon
@@ -447,6 +519,69 @@ jenkins:
               secretName: molgenis-pipeline-vault-secret
               secretKey: addr
       NodeSelector: {}
+    molgenis-it:
+      InheritFrom: molgenis
+      Label: molgenis-it
+      NodeUsageMode: EXCLUSIVE
+      Containers:
+        elasticsearch:
+          Image: docker.elastic.co/elasticsearch/elasticsearch
+          ImageTag: 5.5.3
+          resources:
+            requests:
+              cpu: "100m"
+              memory: "1Gi"
+            limits:
+              cpu: "1"
+              memory: "1500Mi"
+          EnvVars:
+          - type: KeyValue
+            key: ES_JAVA_OPTS
+            value: "-Xms512m -Xmx512m"
+          - type: KeyValue
+            key: cluster.name
+            value: molgenis
+          - type: KeyValue
+            key: bootstrap.memory_lock
+            value: "true"
+          - type: KeyValue
+            key: xpack.security.enabled
+            value: "false"
+          - type: KeyValue
+            key: discovery.type
+            value: single-node
+        postgres:
+          Image: postgres
+          ImageTag: 9.6-alpine
+          resources:
+            requests:
+              cpu: "100m"
+              memory: "250Mi"
+            limits:
+              cpu: "1"
+              memory: "250Mi"
+          EnvVars:
+          - type: KeyValue
+            key: POSTGRES_USER
+            value: molgenis
+          - type: KeyValue
+            key: POSTGRES_PASSWORD
+            value: molgenis
+          - type: KeyValue
+            key: POSTGRES_DB
+            value: molgenis
+        opencpu:
+          Image: molgenis/opencpu
+          AlwaysPullImage: true
+          resources:
+            requests:
+              cpu: "100m"
+              memory: "256Mi"
+            limits:
+              cpu: "1"
+              memory: "512Mi"
+      NodeSelector: {}
+
 #secret contains configuration for the kubernetes secrets that jenkins can access
 secret:
   # vault configures the vault secret

molgenis-opencpu/.helmignore

@@ -0,0 +1,21 @@
+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj

molgenis-opencpu/Chart.yaml

@@ -0,0 +1,8 @@
+apiVersion: v1
+appVersion: "1.0"
+description: Opencpu stack for MOLGENIS
+name: molgenis-opencpu
+version: 0.1.1
+sources:
+- https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-helm.git
+icon: https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-helm/raw/master/molgenis-opencpu/catalogIcon-molgenis-opencpu.svg

molgenis-opencpu/README.md

@@ -0,0 +1,38 @@
+# MOLGENIS - OpenCPU Helm Chart
+
+NEXUS repository for kubernetes to deploy on a kubernetes cluster with NFS-share
+
+## Containers
+
+This chart will deploy the following containers:
+
+- OpenCPU
+- MOLGENIS-httpd (to proxy the registry and docker to one domain)
+
+## Provisioning
+You can choose for the OpenCPU image from which repository you want to pull. Experimental builds are pushed to registry.molgenis.org and the stable builds to hub.docker.com. 
+You need to fill out 2 properties to determine which repository you are going to use.
+
+- ```opencpu.image.repository```
+- ```opencpu.image.tag```
+
+You can do this in the questions in Rancher or in the ```values.yaml```.
+
+
+
+## Development
+You can test in install the chart by executing:
+
+```helm lint .```
+
+To test if your helm chart-syntax is right and:
+
+```helm install . --dry-run --debug```
+
+To test if your hem chart works and:
+
+```helm install .```
+
+To deploy it on the cluster.
+
+

molgenis-opencpu/questions.yml

@@ -0,0 +1,28 @@
+
+categories:
+- MOLGENIS
+questions:
+- variable: ingress.enabled
+  label: Enable ingress
+  default: false
+  description: "Enable ingress"
+  type: boolean
+  required: true
+  group: "Loadbalancing"
+- variable: opencpu.image.repository
+  label: Registry
+  default: "registry.hub.docker.com"
+  description: "Select a registry to pull from"
+  type: enum
+  options:
+  - "registry.hub.docker.com"
+  - "registry.molgenis.org"
+  required: true
+  group: "Provisioning"
+- variable: opencpu.image.tag
+  label: Version
+  default: ""
+  description: "Select a OpenCPU version (check the registry.molgenis.org or hub.docker.com for released tags)"
+  type: string
+  required: true
+  group: "Provisioning"

molgenis-opencpu/templates/_helpers.tpl

@@ -0,0 +1,32 @@
+{{/* vim: set filetype=mustache: */}}
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "opencpu.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "opencpu.fullname" -}}
+{{- if .Values.fullnameOverride -}}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- $name := default .Chart.Name .Values.nameOverride -}}
+{{- if contains $name .Release.Name -}}
+{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "opencpu.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
+{{- end -}}

molgenis-opencpu/templates/deployment.yaml

@@ -0,0 +1,35 @@
+apiVersion: extensions/v1beta1
+kind: Deployment
+metadata:
+  {{- with .Values.ingress.annotations }}
+  annotations:
+{{ toYaml . | indent 4 }}
+  {{- end }}
+  name: {{ template "opencpu.fullname" . }}
+  labels:
+    app: {{ template "opencpu.name" . }}
+    chart: {{ template "opencpu.chart" . }}
+    release: {{ .Release.Name }}
+    heritage: {{ .Release.Service }}
+spec:
+  replicas: {{ .Values.replicaCount }}
+  selector:
+    matchLabels:
+      app: {{ template "opencpu.name" . }}
+      release: {{ .Release.Name }}
+  template:
+    metadata:
+      labels:
+        app: {{ template "opencpu.name" . }}
+        release: {{ .Release.Name }}
+    spec:
+      containers:
+      {{- with .Values.opencpu }}
+      - name: {{ .name }}
+        image: "{{ .image.repository }}/{{ .image.name }}:{{ .image.tag }}"
+        imagePullPolicy: {{ .image.pullPolicy }}
+        ports:
+        - containerPort: {{ .service.port }}
+      {{- end }}
+
+

molgenis-opencpu/templates/ingress.yaml

@@ -0,0 +1,36 @@
+{{- if .Values.ingress.enabled }}
+{{- range .Values.ingress.hosts }}
+apiVersion: extensions/v1beta1
+kind: Ingress
+metadata:
+  name: "{{ $.Release.Name }}-ingress"
+  labels:
+    app:  {{ $.Values.opencpu.name }}
+    chart: "{{ $.Chart.Name }}-{{ $.Chart.Version }}"
+    release: "{{ $.Release.Name }}"
+    heritage: "{{ $.Release.Service }}"
+  annotations:
+    {{- if .tls }}
+    ingress.kubernetes.io/secure-backends: "true"
+    {{- end }}
+    {{- range $key, $value := .annotations }}
+    {{ $key }}: {{ $value | quote }}
+    {{- end }}
+spec:
+  rules:
+  - host: {{ .name }}
+    http:
+      paths:
+        - path: {{ default "/" .path }}
+          backend:
+            serviceName: {{ $.Values.opencpu.service.name }}
+            servicePort: {{ $.Values.opencpu.service.port }}
+{{- if .tls }}
+  tls:
+  - hosts:
+    - {{ .name }}
+    secretName: {{ .tlsSecret }}
+{{- end }}
+---
+{{- end }}
+{{- end }}

molgenis-opencpu/templates/service.yaml

@@ -0,0 +1,20 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ .Values.opencpu.service.name }}
+  labels:
+    app: {{ .Values.opencpu.service.name }}
+    release: {{ .Release.Name }}
+    heritage: {{ .Release.Service }}
+spec:
+  type: {{ .Values.opencpu.service.type }}
+  loadBalancerSourceRanges:
+  {{- range $index, $rule := .Values.opencpu.service.firewall }}
+    - {{ $rule }}
+  {{- end }}
+  ports:
+    - name: {{ .Values.opencpu.service.name }}
+      port: {{ .Values.opencpu.service.port }}
+  selector:
+    app: {{ template "opencpu.name" . }}
+    release: {{ .Release.Name }}

molgenis-opencpu/values.yaml

@@ -0,0 +1,41 @@
+# Default values for nexus.
+# This is a YAML-formatted file.
+# Declare variables to be passed into your templates.
+
+replicaCount: 1
+
+environment: production
+
+opencpu:
+  name: opencpu
+  strategy:
+    type: Recreate
+  restartPolicy: Always
+  image:
+    repository: registry.hub.docker.com
+    name: molgenis/opencpu
+    tag: stable
+    pullPolicy: Always
+  service:
+    name: opencpu
+    type: LoadBalancer
+    port: 8004
+    firewall:
+    - 145.100.224.1/24
+
+ingress:
+  enabled: false
+  annotations: {
+    kubernetes.io/ingress.class: "nginx",
+    nginx.ingress.kubernetes.io/proxy-body-size: "0"
+  }
+  path: /
+  hosts:
+  - name: opencpu.molgenis.org
+  tls: []
+
+nodeSelector: {}
+
+tolerations: []
+
+affinity: {}

molgenis-vault/Chart.yaml

@@ -2,5 +2,5 @@ apiVersion: v1
 appVersion: "1.0"
 description: MOLGENIS vault
 name: molgenis-vault
-version: 0.2.1
+version: 0.1.1
 icon: https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-helm/raw/master/molgenis-vault/catalogIcon-molgenis-vault.svg

molgenis-vault/README.md

@@ -13,25 +13,21 @@ See https://github.com/coreos/vault-operator/blob/master/doc/user/vault.md
 ## Parameters
 
 ### Azure cloud credentials
-Define credentials for an S3 compatible backup bucket.
+Define credentials for backup to the Azure Blob Store.
-See [etcd-operator documentation](https://github.com/coreos/etcd-operator/blob/master/doc/user/walkthrough/backup-operator.md).
+See [etcd-operator documentation](https://github.com/coreos/etcd-operator/blob/master/doc/user/abs_backup.md).
-> Default values backup to the minio play server.
-You can host the stable/minio chart to backup to a bucket on the cluster.
 
-| Parameter            | Description                              | Default                                    |
+| Parameter       | Description                   | Default            |
-| -------------------- | ---------------------------------------- | ------------------------------------------ |
+| --------------- | ----------------------------- | ------------------ |
-| `s3.accessKeyId`     | key id storage account                   | `Q3AM3UQ867SPQQA43P2F`                     |
+| `abs.account`   | name of storage account       | `fdlkops`          |
-| `s3.secretAccessKey` | secret access key of storage account     | `zuf+tfteSlswRu7BJ86wekitnifILbZam1KYY3TG` |
+| `abs.accessKey` | access key of storage account | `xxxx`             |
-| `s3.region`          | region of the storage server             | `us-east-1`                                |
+| `abs.cloud`     | name of cloud environment     | `AzurePublicCloud` |
-| `s3.endpoint`        | endpoint for the storage server          | `https://play.minio.io:9000`               |
-| `s3.bucket`          | name of the bucket on the storage server | `vault`                                    |
 
 ### Backup job
 Define the schedule of the backup job
 
 | Parameter            | Description                  | Default       |
 | -------------------- | ---------------------------- | ------------- |
-| `backupJob.suspend`  | Suspend backup cronjob       | `false`       |
+| `backupJob.enable`   | Enable backup cronjob        | `true`        |
 | `backupJob.schedule` | cron schedule for the backup | `0 12 * * 1`  |
 
 ### UI

molgenis-vault/resources/backup.yaml

@@ -1,13 +0,0 @@
-apiVersion: "etcd.database.coreos.com/v1beta2"
-kind: "EtcdBackup"
-metadata:
-  name: vault-backup
-  namespace: "vault-operator"
-spec:
-  etcdEndpoints: ["https://vault-etcd-client:2379"]
-  storageType: S3
-  clientTLSSecret: vault-etcd-client-tls
-  s3:
-    path: vault/backup-manual
-    awsSecret: aws
-    endpoint: http://minio.minio.svc:9000

molgenis-vault/resources/restore.yaml

@@ -9,8 +9,7 @@ spec:
   etcdCluster:
     # The namespace is the same as this EtcdRestore CR
     name: vault-etcd
-  backupStorageType: S3
+  backupStorageType: ABS
-  s3:
+  abs:
-    path: vault/backup-<name>
+    path: vault/backup-<specify the backup name>
-    awsSecret: aws
+    absSecret: abs
-    endpoint: http://minio.minio.svc:9000

molgenis-vault/templates/NOTES.txt

@@ -3,15 +3,11 @@ Vault operator created
 Next steps:
 
 * Manually create a vault using resources/vault.yaml
-* Manually restore a backup using resources/restore.yaml
+* Manually restore a backup using resources/backup.yaml
 * Unseal the vault pods
 
-{{ if .Values.backupJob.suspend }}
+{{ if .Values.backupJob.enable }}
-!!!!!! BACKUP JOB SUSPENDED !!!!!!
-{{ else }}
-{{- if .Values.s3.endpoint -}}
-Backing up to non-standard s3 endpoint {{ .Values.s3.endpoint }} {{ else -}}
-Backing up to S3 on aws {{ end -}}
-in bucket {{ .Values.s3.bucket }}.
 !! Make sure to check if the backups succeed !!
+{{ else }}
+!!!!!! NO BACKUPS CONFIGURED !!!!!!
 {{ end }}

molgenis-vault/templates/abs-secret.yaml

@@ -0,0 +1,10 @@
+# Secret to access microsoft azure blob store
+apiVersion: v1
+kind: Secret
+metadata:
+  name: abs
+type: Opaque
+stringData:
+  storage-account: {{ .Values.abs.account }}
+  storage-key: {{ .Values.abs.accessKey }}
+  cloud: {{ .Values.abs.cloud }}

molgenis-vault/templates/aws-secret.yaml

@@ -1,10 +0,0 @@
-# Secret to access s3 compatible store
-apiVersion: v1
-kind: Secret
-metadata:
-  name: aws
-type: Opaque
-data:
-  config: {{ printf "[default]\nregion = %s" .Values.s3.region | b64enc | quote }}
-  credentials: {{ printf "[default]\naws_access_key_id = %s\naws_secret_access_key = %s\n" .Values.s3.accessKeyId .Values.s3.secretAccessKey | b64enc | quote }}
-

molgenis-vault/templates/backup-configmap.yaml

@@ -11,14 +11,8 @@ data:
       generateName: vault-backup-
     spec:
       etcdEndpoints: ["https://vault-etcd-client:2379"]
-      storageType: S3
+      storageType: ABS
       clientTLSSecret: vault-etcd-client-tls
-      s3:
+      abs:
-        path: {{ .Values.s3.bucket }}/backup.<NOW>
+        path: vault/backup.<NOW>
-        awsSecret: aws
+        absSecret: abs
-{{- if .Values.s3.endpoint }}
-        endpoint: {{ .Values.s3.endpoint }}
-{{- end }}
-{{- if hasKey .Values.s3 "forcePathStyle" }}
-        forcePathStyle: {{ .Values.s3.forcePathStyle }}
-{{- end }}

molgenis-vault/templates/backup-cronjob.yaml

@@ -1,10 +1,10 @@
+{{- if .Values.backupJob.enable }}
 # cronjob that creates etcdbackups using the etcd backup serviceaccount
 apiVersion: batch/v1beta1
 kind: CronJob
 metadata:
   name: etcd-backup
 spec:
-  suspend: {{ .Values.backupJob.suspend }}
   schedule: {{ .Values.backupJob.schedule | quote }}
   jobTemplate:
     spec:
@@ -26,4 +26,5 @@ spec:
           volumes:
           - name: backup-config
             configMap:
-              name: backup-config
+              name: backup-config
+{{- end }}

molgenis-vault/values.yaml

@@ -2,26 +2,19 @@
 # This is a YAML-formatted file.
 # Declare variables to be passed into your templates.
 
-# s3 configures s3 backup storage
+# abs gives details of the credentials to reach the azure backup storage
-s3:
+abs:
-  # accessKey for the s3 storage account
+  # account is the name of the Storage account
-  accessKeyId: Q3AM3UQ867SPQQA43P2F
+  account: fdlkops
-  # secretAccessKey for the s3 storage account
+  # access key for the Storage account
-  secretAccessKey: zuf+tfteSlswRu7BJ86wekitnifILbZam1KYY3TG
+  accessKey: xxxx
-  # region
+  # default cloud
-  region: us-east-1
+  cloud: AzurePublicCloud
-  # endpoint for the s3 storage
-  endpoint: https://play.minio.io:9000
-  # forcePathStyle if set to true forces requests to use path style
-  # (host/bucket instead of bucket.host)
-  forcePathStyle: true
-  # bucket is the name of the bucket
-  bucket: vault
 
 # backupjob describes the backup cronjob
 backupJob:
-  # suspend suspends the backup job
+  # enable enables the backup job
-  suspend: false
+  enable: true
   # schedule gives the cron schedule for the backup job
   schedule: "0 12 * * 1"
 
@@ -47,12 +40,10 @@ etcd-operator:
       tag: v0.9.2
   backupOperator:
     image:
-      repository: fdlk/etcd-operator
+      tag: v0.9.2
-      tag: latest
   restoreOperator:
     image:
-      repository: fdlk/etcd-operator
+      tag: v0.9.2
-      tag: latest
 
 ui:
   name: "vault-ui"