jenkins: Master: HostName: jenkins.molgenis.org ServiceType: ClusterIP InstallPlugins: - kubernetes:1.12.0 - workflow-aggregator:2.5 - workflow-job:2.21 - credentials-binding:1.16 - git:3.9.1 - github-branch-source:2.3.6 - kubernetes-credentials-provider:0.9 - blueocean:1.6.2 - github-oauth:0.29 - gogs-webhook:1.0.14 - sauce-ondemand:1.176 Security: UseGitHub: false GitHub: ClientID: "" ClienSecret: "" DefaultView: dev Views: dev: - molgenis ops: - molgenis-ops-docker-httpd - molgenis-ops-docker-maven - molgenis-ops-docker-node - molgenis-ops-tools - molgenis-ops-tomcat Jobs: |- molgenis: |- <?xml version='1.1' encoding='UTF-8'?> <jenkins.branch.OrganizationFolder plugin="branch-api@2.0.20"> <actions/> <description></description> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> <jenkins.branch.NoTriggerOrganizationFolderProperty> <branches>.*</branches> </jenkins.branch.NoTriggerOrganizationFolderProperty> </properties> <folderViews class="jenkins.branch.OrganizationFolderViewHolder"> <owner reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon"> <owner class="jenkins.branch.OrganizationFolder" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers> <com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger plugin="cloudbees-folder@6.5.1"> <spec>H H * * *</spec> <interval>86400000</interval> </com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger> </triggers> <disabled>false</disabled> <navigators> <org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator plugin="github-branch-source@2.3.6"> <repoOwner>molgenis</repoOwner> <credentialsId>molgenis-jenkins-github-secret</credentialsId> <traits> <org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait> <strategyId>1</strategyId> </org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait> <org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait> <strategyId>1</strategyId> </org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait> <org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait> <strategyId>1</strategyId> <trust class="org.jenkinsci.plugins.github_branch_source.ForkPullRequestDiscoveryTrait$TrustPermission"/> </org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait> </traits> </org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator> </navigators> <projectFactories> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory plugin="workflow-multibranch@2.19"> <scriptPath>Jenkinsfile</scriptPath> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory> </projectFactories> <buildStrategies/> </jenkins.branch.OrganizationFolder> molgenis-ops-docker-httpd: |- <?xml version='1.1' encoding='UTF-8'?> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19"> <actions/> <description>HTTPD server that can be used for redirection and proxieing</description> <displayName>molgenis-ops-docker-httpd</displayName> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> </properties> <folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers/> <disabled>false</disabled> <sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20"> <data> <jenkins.branch.BranchSource> <source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1"> <id>a756941d-6c9d-4492-bcf9-327041764be6</id> <remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-httpd.git</remote> <credentialsId>molgenis-jenkins-gogs-secret</credentialsId> <traits> <jenkins.plugins.git.traits.BranchDiscoveryTrait/> </traits> </source> <strategy class="jenkins.branch.DefaultBranchPropertyStrategy"> <properties class="empty-list"/> </strategy> </jenkins.branch.BranchSource> </data> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </sources> <factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> <scriptPath>Jenkinsfile</scriptPath> </factory> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject> molgenis-ops-docker-node: |- <?xml version='1.1' encoding='UTF-8'?> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19"> <actions/> <description>NodeJS build container with Curl</description> <displayName>molgenis-ops-docker-node</displayName> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> </properties> <folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers/> <disabled>false</disabled> <sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20"> <data> <jenkins.branch.BranchSource> <source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1"> <id>a756941d-6c9d-4492-bcf9-327041764be6</id> <remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-node.git</remote> <credentialsId>molgenis-jenkins-gogs-secret</credentialsId> <traits> <jenkins.plugins.git.traits.BranchDiscoveryTrait/> </traits> </source> <strategy class="jenkins.branch.DefaultBranchPropertyStrategy"> <properties class="empty-list"/> </strategy> </jenkins.branch.BranchSource> </data> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </sources> <factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> <scriptPath>Jenkinsfile</scriptPath> </factory> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject> molgenis-ops-docker-maven: |- <?xml version='1.1' encoding='UTF-8'?> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19"> <actions/> <description>MAVEN build container with RPMbuild and Curl</description> <displayName>molgenis-ops-docker-maven</displayName> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> </properties> <folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers/> <disabled>false</disabled> <sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20"> <data> <jenkins.branch.BranchSource> <source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1"> <id>4702479a-6988-4a85-b4b7-e77fa2d05ffa</id> <remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-maven.git</remote> <credentialsId>molgenis-jenkins-gogs-secret</credentialsId> <traits> <jenkins.plugins.git.traits.BranchDiscoveryTrait/> </traits> </source> <strategy class="jenkins.branch.DefaultBranchPropertyStrategy"> <properties class="empty-list"/> </strategy> </jenkins.branch.BranchSource> </data> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </sources> <factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> <scriptPath>Jenkinsfile</scriptPath> </factory> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject> molgenis-ops-tomcat: |- <?xml version='1.1' encoding='UTF-8'?> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19"> <actions/> <description>MOLGENIS tomcat package to manage tomcat version on CentOS</description> <displayName>molgenis-ops-tomcat</displayName> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> </properties> <folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers/> <disabled>false</disabled> <sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20"> <data> <jenkins.branch.BranchSource> <source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1"> <id>4702479a-6988-4a85-b4b7-e77fa2d05ffa</id> <remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-tomcat.git</remote> <credentialsId>molgenis-jenkins-gogs-secret</credentialsId> <traits> <jenkins.plugins.git.traits.BranchDiscoveryTrait/> </traits> </source> <strategy class="jenkins.branch.DefaultBranchPropertyStrategy"> <properties class="empty-list"/> </strategy> </jenkins.branch.BranchSource> </data> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </sources> <factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> <scriptPath>Jenkinsfile</scriptPath> </factory> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject> molgenis-ops-tools: |- <?xml version='1.1' encoding='UTF-8'?> <org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19"> <actions/> <description>MOLGENIS operations tools-package to configure firewall, apache, sudoers, etc.</description> <displayName>molgenis-ops-tools</displayName> <properties> <org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1"> <dockerLabel></dockerLabel> <registry plugin="docker-commons@1.13"/> </org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig> </properties> <folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </folderViews> <healthMetrics> <com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1"> <nonRecursive>false</nonRecursive> </com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric> </healthMetrics> <icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </icon> <orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1"> <pruneDeadBranches>true</pruneDeadBranches> <daysToKeep>-1</daysToKeep> <numToKeep>-1</numToKeep> </orphanedItemStrategy> <triggers/> <disabled>false</disabled> <sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20"> <data> <jenkins.branch.BranchSource> <source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1"> <id>4702479a-6988-4a85-b4b7-e77fa2d05ffa</id> <remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-tools.git</remote> <credentialsId>molgenis-jenkins-gogs-secret</credentialsId> <traits> <jenkins.plugins.git.traits.BranchDiscoveryTrait/> </traits> </source> <strategy class="jenkins.branch.DefaultBranchPropertyStrategy"> <properties class="empty-list"/> </strategy> </jenkins.branch.BranchSource> </data> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> </sources> <factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory"> <owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/> <scriptPath>Jenkinsfile</scriptPath> </factory> </org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject> # Kubernetes secret that contains a 'credentials.xml' for Jenkins # CredentialsXmlSecret: jenkins-credentials # Kubernetes secret that contains files to be put in the Jenkins 'secrets' directory, # useful to manage encryption keys used for credentials.xml for instance (such as # master.key and hudson.util.Secret) # SecretsFilesSecret: jenkins-secrets CustomConfigMap: true rbac: install: true Pods: molgenis: Label: molgenis NodeUsageMode: NORMAL volumes: - type: HostPath hostPath: "/var/run/docker.sock" mountPath: "/var/run/docker.sock" Containers: maven: Image: "registry.webhosting.rug.nl/molgenis/maven" ImageTag: lts AlwaysPullImage: true Command: cat WorkingDir: /home/jenkins TTY: true resources: requests: cpu: "1" memory: "4Gi" EnvVars: - type: KeyValue key: MAVEN_OPTS value: "-Duser.home=/home/jenkins" - type: KeyValue key: MAVEN_CONFIG value: "/home/jenkins/.m2" alpine: Image: "spotify/alpine" Command: cat WorkingDir: /home/jenkins TTY: true vault: Image: "vault" Command: cat WorkingDir: /home/jenkins TTY: true EnvVars: - type: Secret key: VAULT_TOKEN secretName: molgenis-pipeline-vault-secret secretKey: token - type: Secret key: VAULT_SKIP_VERIFY secretName: molgenis-pipeline-vault-secret secretKey: skipVerify - type: Secret key: VAULT_ADDR secretName: molgenis-pipeline-vault-secret secretKey: addr NodeSelector: {} node: Label: node-carbon NodeUsageMode: EXCLUSIVE Containers: node: Image: "registry.webhosting.rug.nl/molgenis/node" ImageTag: lts AlwaysPullImage: true Command: cat WorkingDir: /home/jenkins TTY: true vault: Image: "vault" Command: cat WorkingDir: /home/jenkins TTY: true EnvVars: - type: Secret key: VAULT_TOKEN secretName: molgenis-pipeline-vault-secret secretKey: token - type: Secret key: VAULT_SKIP_VERIFY secretName: molgenis-pipeline-vault-secret secretKey: skipVerify - type: Secret key: VAULT_ADDR secretName: molgenis-pipeline-vault-secret secretKey: addr NodeSelector: {} #secret contains configuration for the kubernetes secrets that jenkins can access secret: # vault configures the vault secret vault: token: xxxx addr: "https://vault-operator.vault-operator.svc:8200" skipVerify: "1" # githubToken contains access token for jenkins bot account on github.com gitHub: user: "molgenis-jenkins" token: xxxx # gogs contains access token for jenkins bot account on RuG GoGs gogs: user: p281392 token: xxxx # registry contains credentials for registry.molgenis.org registry: user: admin password: xxxx # dockerHubPassword contains password for hub.docker.com dockerHub: user: molgenisci password: xxxx