314 lines
14 KiB
YAML
314 lines
14 KiB
YAML
jenkins:
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Master:
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HostName: jenkins.molgenis.org
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ServiceType: ClusterIP
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InstallPlugins:
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- kubernetes:1.8.4
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- workflow-aggregator:2.5
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- workflow-job:2.21
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- credentials-binding:1.16
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- git:3.9.1
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- github-branch-source:2.3.6
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- kubernetes-credentials-provider:0.9
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- blueocean:1.6.1
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Jobs: |-
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molgenis: |-
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<?xml version='1.1' encoding='UTF-8'?>
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<jenkins.branch.OrganizationFolder plugin="branch-api@2.0.20">
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<actions/>
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<description></description>
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<properties>
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<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
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<dockerLabel></dockerLabel>
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<registry plugin="docker-commons@1.13"/>
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</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
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<jenkins.branch.NoTriggerOrganizationFolderProperty>
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<branches>.*</branches>
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</jenkins.branch.NoTriggerOrganizationFolderProperty>
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</properties>
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<folderViews class="jenkins.branch.OrganizationFolderViewHolder">
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<owner reference="../.."/>
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</folderViews>
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<healthMetrics>
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<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
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<nonRecursive>false</nonRecursive>
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</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
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</healthMetrics>
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<icon class="jenkins.branch.MetadataActionFolderIcon">
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<owner class="jenkins.branch.OrganizationFolder" reference="../.."/>
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</icon>
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<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
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<pruneDeadBranches>true</pruneDeadBranches>
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<daysToKeep>-1</daysToKeep>
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<numToKeep>-1</numToKeep>
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</orphanedItemStrategy>
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<triggers>
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<com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger plugin="cloudbees-folder@6.5.1">
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<spec>H H * * *</spec>
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<interval>86400000</interval>
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</com.cloudbees.hudson.plugins.folder.computed.PeriodicFolderTrigger>
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</triggers>
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<disabled>false</disabled>
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<navigators>
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<org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator plugin="github-branch-source@2.3.6">
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<repoOwner>molgenis</repoOwner>
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<credentialsId>molgenis-jenkins-github-secret</credentialsId>
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<traits>
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<org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
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<strategyId>1</strategyId>
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</org.jenkinsci.plugins.github__branch__source.BranchDiscoveryTrait>
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<org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
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<strategyId>1</strategyId>
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</org.jenkinsci.plugins.github__branch__source.OriginPullRequestDiscoveryTrait>
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<org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
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<strategyId>1</strategyId>
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<trust class="org.jenkinsci.plugins.github_branch_source.ForkPullRequestDiscoveryTrait$TrustPermission"/>
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</org.jenkinsci.plugins.github__branch__source.ForkPullRequestDiscoveryTrait>
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</traits>
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</org.jenkinsci.plugins.github__branch__source.GitHubSCMNavigator>
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</navigators>
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<projectFactories>
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<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory plugin="workflow-multibranch@2.19">
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<scriptPath>Jenkinsfile</scriptPath>
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</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProjectFactory>
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</projectFactories>
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<buildStrategies/>
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</jenkins.branch.OrganizationFolder>
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molgenis-operations: |-
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<?xml version='1.1' encoding='UTF-8'?>
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<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19">
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<actions/>
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<description>HTTPD server that can be used for redirection and proxieing</description>
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<displayName>molgenis-ops-docker-httpd</displayName>
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<properties>
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<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
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<dockerLabel></dockerLabel>
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<registry plugin="docker-commons@1.13"/>
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</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
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</properties>
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<folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</folderViews>
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<healthMetrics>
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<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
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<nonRecursive>false</nonRecursive>
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</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
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</healthMetrics>
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<icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</icon>
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<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
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<pruneDeadBranches>true</pruneDeadBranches>
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<daysToKeep>-1</daysToKeep>
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<numToKeep>-1</numToKeep>
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</orphanedItemStrategy>
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<triggers/>
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<disabled>false</disabled>
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<sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20">
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<data>
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<jenkins.branch.BranchSource>
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<source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1">
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<id>a756941d-6c9d-4492-bcf9-327041764be6</id>
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<remote>https://git.webhosting.rug.nl/molgenis/molgenis-ops-docker-httpd.git</remote>
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<credentialsId>molgenis-jenkins-github-secret</credentialsId>
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<traits>
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<jenkins.plugins.git.traits.BranchDiscoveryTrait/>
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</traits>
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</source>
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<strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
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<properties class="empty-list"/>
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</strategy>
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</jenkins.branch.BranchSource>
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</data>
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</sources>
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<factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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<scriptPath>Jenkinsfile</scriptPath>
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</factory>
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</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject>
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molgenis-ops-docker-maven: |-
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<?xml version='1.1' encoding='UTF-8'?>
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<org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject plugin="workflow-multibranch@2.19">
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<actions/>
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<description></description>
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<properties>
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<org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig plugin="pipeline-model-definition@1.3.1">
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<dockerLabel></dockerLabel>
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<registry plugin="docker-commons@1.13"/>
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</org.jenkinsci.plugins.pipeline.modeldefinition.config.FolderConfig>
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</properties>
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<folderViews class="jenkins.branch.MultiBranchProjectViewHolder" plugin="branch-api@2.0.20">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</folderViews>
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<healthMetrics>
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<com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric plugin="cloudbees-folder@6.5.1">
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<nonRecursive>false</nonRecursive>
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</com.cloudbees.hudson.plugins.folder.health.WorstChildHealthMetric>
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</healthMetrics>
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<icon class="jenkins.branch.MetadataActionFolderIcon" plugin="branch-api@2.0.20">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</icon>
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<orphanedItemStrategy class="com.cloudbees.hudson.plugins.folder.computed.DefaultOrphanedItemStrategy" plugin="cloudbees-folder@6.5.1">
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<pruneDeadBranches>true</pruneDeadBranches>
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<daysToKeep>-1</daysToKeep>
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<numToKeep>-1</numToKeep>
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</orphanedItemStrategy>
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<triggers/>
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<disabled>false</disabled>
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<sources class="jenkins.branch.MultiBranchProject$BranchSourceList" plugin="branch-api@2.0.20">
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<data>
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<jenkins.branch.BranchSource>
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<source class="jenkins.plugins.git.GitSCMSource" plugin="git@3.9.1">
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<id>4702479a-6988-4a85-b4b7-e77fa2d05ffa</id>
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<remote>https://git.webhosting.rug.nl/molgenis/molgenis=ops-docker-maven.git</remote>
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<credentialsId></credentialsId>
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<traits>
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<jenkins.plugins.git.traits.BranchDiscoveryTrait/>
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</traits>
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</source>
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<strategy class="jenkins.branch.DefaultBranchPropertyStrategy">
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<properties class="empty-list"/>
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</strategy>
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</jenkins.branch.BranchSource>
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</data>
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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</sources>
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<factory class="org.jenkinsci.plugins.workflow.multibranch.WorkflowBranchProjectFactory">
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<owner class="org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject" reference="../.."/>
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<scriptPath>Jenkinsfile</scriptPath>
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</factory>
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</org.jenkinsci.plugins.workflow.multibranch.WorkflowMultiBranchProject>
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# Kubernetes secret that contains a 'credentials.xml' for Jenkins
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# CredentialsXmlSecret: jenkins-credentials
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# Kubernetes secret that contains files to be put in the Jenkins 'secrets' directory,
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# useful to manage encryption keys used for credentials.xml for instance (such as
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# master.key and hudson.util.Secret)
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# SecretsFilesSecret: jenkins-secrets
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CustomConfigMap: true
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rbac:
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install: true
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Pods:
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molgenis:
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Label: molgenis
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NodeUsageMode: NORMAL
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volumes:
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- type: HostPath
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hostPath: "/var/run/docker.sock"
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mountPath: "/var/run/docker.sock"
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- type: Secret
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secretName: molgenis-pipeline-file-secret
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mountPath: "/root/.m2"
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Containers:
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maven:
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Image: "registry.webhosting.rug.nl/molgenis/maven"
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Command: cat
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TTY: true
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resources:
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requests:
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cpu: "1"
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memory: "4Gi"
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alpine:
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Image: "spotify/alpine"
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Command: cat
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TTY: true
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# Hard to get these right memorywise!
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# elasticsearch:
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# Image: "elasticsearch"
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# ImageTag: "5.5.1"
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# Ports:
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# - name: rest
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# containerPort: "9200"
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# - name: api
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# containerPort: "9300"
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# postgres:
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# Image: "postgres"
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# ImageTag: "9.6-alpine"
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# Ports:
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# - name: postgres
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# containerPort: "5432"
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EnvVars:
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- type: Secret
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key: PGP_PASSPHRASE
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secretName: molgenis-pipeline-env-secret
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secretKey: pgpPassphrase
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- type: KeyValue
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key: PGP_SECRETKEY
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value: "keyfile:/root/.m2/key.asc"
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- type: KeyValue
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key: npm_config_registry
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value: "http://nexus.molgenis-nexus:8081/repository/npm-central/"
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- type: Secret
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key: SONAR_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: sonarToken
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- type: Secret
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key: CODECOV_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: codecovToken
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- type: Secret
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key: GITHUB_TOKEN
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secretName: molgenis-pipeline-env-secret
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secretKey: githubToken
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# If needed
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# ImagePullSecret: jenkins
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NodeSelector: {}
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PipelineSecrets:
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Env:
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# Set to false to keep existing secret
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Replace: true
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# Passphrase for the pgp private key file, prefixed with literal:
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PGPPassphrase: literal:xxxx
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# Token for codecov.io service
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CodecovToken: xxxx
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# Token for github bot account
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GitHubToken: xxxx
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# Token for github bot account
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GogsToken: xxxx
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# Token for sonarcloud.io
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SonarToken: xxxx
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# Password Local NEXUS
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NexusPassword: xxxx
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# Password hub.docker.com
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DockerHubPassword: xxxx
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File:
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# Set to false to keep existing secret
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Replace: true
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# PGP Private key in ascii format used to sign artifacts
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PGPPrivateKeyAsc: |-
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-----BEGIN PGP PRIVATE KEY BLOCK-----
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xxxxx
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-----END PGP PRIVATE KEY BLOCK-----
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# maven.settings file
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MavenSettingsXML: |-
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<settings>
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<localRepository>${user.home}/.mvnrepository</localRepository>
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<interactiveMode>false</interactiveMode>
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<mirrors>
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<mirror>
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<id>nexus</id>
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<mirrorOf>external:*</mirrorOf>
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<url>http://nexus.molgenis-nexus:8081/repository/maven-central/</url>
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</mirror>
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</mirrors>
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<servers>
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<!-- for snapshot builds of the master -->
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<server>
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<id>sonatype-nexus-staging</id>
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<username>molgenis</username>
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<password>xxxx</password>
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</server>
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<server>
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<id>local-nexus</id>
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<url>http://nexus.molgenis-nexus:8081/repository/maven-snapshots/</url>
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<username>admin</username>
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<password>xxxxx</password>
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</server>
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<!-- for docker images-->
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<server>
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<id>registry.molgenis.org</id>
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<username>admin</username>
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<password>xxxx</password>
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</server>
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</servers>
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</settings> |