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Fleur Kelpin c47de0a6cb make molgenis-jenkins depend on subchart 2018-06-27 16:26:49 +02:00
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README.md

Molgenis Jenkins Helm Chart

Jenkins master and slave cluster utilizing the Jenkins Kubernetes plugin

Inspired by the awesome work of Carlos Sanchez mailto:carlos@apache.org

Chart Details

This chart will do the following:

  • 1 x Jenkins Master with port 8080 exposed on an external ClusterIP
  • All using Kubernetes Deployments

Installing the Chart

In the rancher UI, choose the molgenis-jenkins app from the catalog and deploy it.

Configuration

The following tables list the configurable parameters of the Jenkins chart and their default values. You can paste these values into the Rancher Answers if you like. Array values can be added as {value, value, value}, e.g.

jenkins.Master.InstallPlugins={kubernetes:1.8.4, workflow-aggregator:2.5, workflow-job:2.21, credentials-binding:1.16, git:3.9.1}

Because we use jenkins as a sub-chart, you should prefix all values with jenkins!

Jenkins Master

Parameter Description Default
nameOverride Override the resource name prefix jenkins
fullnameOverride Override the full resource names jenkins-{release-name} (or jenkins if release-name is jenkins)
Master.Name Jenkins master name jenkins-master
Master.Image Master image name jenkinsci/jenkins
Master.ImageTag Master image tag lts
Master.ImagePullPolicy Master image pull policy Always
Master.ImagePullSecret Master image pull secret Not set
Master.Component k8s selector key jenkins-master
Master.UseSecurity Use basic security true
Master.AdminUser Admin username (and password) created as a secret if useSecurity is true admin
Master.Cpu Master requested cpu 200m
Master.Memory Master requested memory 256Mi
Master.InitContainerEnv Environment variables for Init Container Not set
Master.ContainerEnv Environment variables for Jenkins Container Not set
Master.RunAsUser uid that jenkins runs with 0
Master.FsGroup uid that will be used for persistent volume 0
Master.ServiceAnnotations Service annotations {}
Master.ServiceType k8s service type LoadBalancer
Master.ServicePort k8s service port 8080
Master.NodePort k8s node port Not set
Master.HealthProbes Enable k8s liveness and readiness probes true
Master.HealthProbesLivenessTimeout Set the timeout for the liveness probe 120
Master.HealthProbesReadinessTimeout Set the timeout for the readiness probe 60
Master.HealthProbeLivenessFailureThreshold Set the failure threshold for the liveness probe 12
Master.ContainerPort Master listening port 8080
Master.SlaveListenerPort Listening port for agents 50000
Master.DisabledAgentProtocols Disabled agent protocols JNLP-connect JNLP2-connect
Master.CSRF.DefaultCrumbIssuer.Enabled Enable the default CSRF Crumb issuer true
Master.CSRF.DefaultCrumbIssuer.ProxyCompatability Enable proxy compatibility true
Master.CLI Enable CLI over remoting false
Master.LoadBalancerSourceRanges Allowed inbound IP addresses 0.0.0.0/0
Master.LoadBalancerIP Optional fixed external IP Not set
Master.JMXPort Open a port, for JMX stats Not set
Master.CustomConfigMap Use a custom ConfigMap false
Master.Ingress.Annotations Ingress annotations {}
Master.Ingress.TLS Ingress TLS configuration []
Master.InitScripts List of Jenkins init scripts Not set
Master.CredentialsXmlSecret Kubernetes secret that contains a 'credentials.xml' file Not set
Master.SecretsFilesSecret Kubernetes secret that contains 'secrets' files Not set
Master.Jobs Jenkins XML job configs Not set
Master.InstallPlugins List of Jenkins plugins to install kubernetes:0.11 workflow-aggregator:2.5 credentials-binding:1.11 git:3.2.0
Master.ScriptApproval List of groovy functions to approve Not set
Master.NodeSelector Node labels for pod assignment {}
Master.Affinity Affinity settings {}
Master.Tolerations Toleration labels for pod assignment {}
NetworkPolicy.Enabled Enable creation of NetworkPolicy resources. false
NetworkPolicy.ApiVersion NetworkPolicy ApiVersion extensions/v1beta1
rbac.install Create service account and ClusterRoleBinding for Kubernetes plugin false
rbac.apiVersion RBAC API version v1beta1
rbac.roleRef Cluster role name to bind to cluster-admin

Jenkins Agent

Parameter Description Default
Agent.AlwaysPullImage Always pull agent container image before build false
Agent.Enabled Enable Kubernetes plugin jnlp-agent podTemplate true
Agent.Image Agent image name jenkinsci/jnlp-slave
Agent.ImagePullSecret Agent image pull secret Not set
Agent.ImageTag Agent image tag 2.62
Agent.Privileged Agent privileged container false
Agent.Cpu Agent requested cpu 200m
Agent.Memory Agent requested memory 256Mi
Agent.volumes Additional volumes nil

Specify each parameter using the --set key=value[,key=value] argument to helm install.

Alternatively, a YAML file that specifies the values for the parameters can be provided while installing the chart. For example,

$ helm install --name my-release -f values.yaml stable/jenkins

Tip: You can use the default values.yaml

Mounting volumes into your Agent pods

Your Jenkins Agents will run as pods, and it's possible to inject volumes where needed:

Agent:
  volumes:
  - type: Secret
    secretName: jenkins-mysecrets
    mountPath: /var/run/secrets/jenkins-mysecrets

The supported volume types are: ConfigMap, EmptyDir, HostPath, Nfs, Pod, Secret. Each type supports a different set of configurable attributes, defined by the corresponding Java class.

NetworkPolicy

To make use of the NetworkPolicy resources created by default, install a networking plugin that implements the Kubernetes NetworkPolicy spec.

For Kubernetes v1.5 & v1.6, you must also turn on NetworkPolicy by setting the DefaultDeny namespace annotation. Note: this will enforce policy for all pods in the namespace:

kubectl annotate namespace default "net.beta.kubernetes.io/network-policy={\"ingress\":{\"isolation\":\"DefaultDeny\"}}"

Install helm chart with network policy enabled:

$ helm install stable/jenkins --set NetworkPolicy.Enabled=true

Persistence

The Jenkins image stores persistence under /var/jenkins_home path of the container. A dynamically managed Persistent Volume Claim is used to keep the data across deployments, by default. This is known to work in GCE, AWS, and minikube. Alternatively, a previously configured Persistent Volume Claim can be used.

It is possible to mount several volumes using Persistence.volumes and Persistence.mounts parameters.

Persistence Values

Parameter Description Default
Persistence.Enabled Enable the use of a Jenkins PVC true
Persistence.ExistingClaim Provide the name of a PVC nil
Persistence.AccessMode The PVC access mode ReadWriteOnce
Persistence.Size The size of the PVC 8Gi
Persistence.volumes Additional volumes nil
Persistence.mounts Additional mounts nil

Existing PersistentVolumeClaim

  1. Create the PersistentVolume
  2. Create the PersistentVolumeClaim
  3. Install the chart
$ helm install --name my-release --set Persistence.ExistingClaim=PVC_NAME stable/jenkins

Custom ConfigMap

When creating a new parent chart with this chart as a dependency, the CustomConfigMap parameter can be used to override the default config.xml provided. It also allows for providing additional xml configuration files that will be copied into /var/jenkins_home. In the parent chart's values.yaml, set the jenkins.Master.CustomConfigMap value to true like so

jenkins:
  Master:
    CustomConfigMap: true

and provide the file templates/config.tpl in your parent chart for your use case. You can start by copying the contents of config.yaml from this chart into your parent charts templates/config.tpl as a basis for customization. Finally, you'll need to wrap the contents of templates/config.tpl like so:

{{- define "override_config_map" }}
    <CONTENTS_HERE>
{{ end }}

RBAC

If running upon a cluster with RBAC enabled you will need to do the following:

  • helm install stable/jenkins --set rbac.install=true
  • Create a Jenkins credential of type Kubernetes service account with service account name provided in the helm status output.
  • Under configure Jenkins -- Update the credentials config in the cloud section to use the service account credential you created in the step above.

Run Jenkins as non root user

The default settings of this helm chart let Jenkins run as root user with uid 0. Due to security reasons you may want to run Jenkins as a non root user. Fortunately the default jenkins docker image jenkins/jenkins contains a user jenkins with uid 1000 that can be used for this purpose.

Simply use the following settings to run Jenkins as jenkins user with uid 1000.

jenkins:
  Master:
    RunAsUser: 1000
    FsGroup: 1000

Docs taken from https://github.com/jenkinsci/docker/blob/master/Dockerfile: Jenkins is run with user jenkins, uid = 1000. If you bind mount a volume from the host or a data container,ensure you use the same uid

Running behind a forward proxy

The master pod uses an Init Container to install plugins etc. If you are behind a corporate proxy it may be useful to set Master.InitContainerEnv to add environment variables such as http_proxy, so that these can be downloaded.

Additionally, you may want to add env vars for the Jenkins container, and the JVM (Master.JavaOpts).

Master:
  InitContainerEnv:
    - name: http_proxy
      value: "http://192.168.64.1:3128"
    - name: https_proxy
      value: "http://192.168.64.1:3128"
    - name: no_proxy
      value: ""
  ContainerEnv:
    - name: http_proxy
      value: "http://192.168.64.1:3128"
    - name: https_proxy
      value: "http://192.168.64.1:3128"
  JavaOpts: >-
    -Dhttp.proxyHost=192.168.64.1
    -Dhttp.proxyPort=3128
    -Dhttps.proxyHost=192.168.64.1
    -Dhttps.proxyPort=3128