P278949/FastCAR
1
1
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Fixed Readme

Browse Source
This commit is contained in:
Marijn 2020-03-26 15:19:45 +01:00
parent 92cb2a655b
commit 48dc9d81e6
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
README.md
View File

@ -55,7 +55,7 @@ plot.ambient.profile(ambProfile)
Set the empty droplet cutoff and the contamination chance cutoff Set the empty droplet cutoff and the contamination chance cutoff
The empty droplet cutoff is the number of UMIs a droplet can contain at the most to be considered empty. The empty droplet cutoff is the number of UMIs a droplet can contain at the most to be considered empty.
100 works fine but we tested this method in only one tissue. For other tissues this might not be the. 100 works fine but we tested this method in only one tissue. For other tissues these settings may need to be changed.
Increasing this number also increases the highest possible value of expression of a given gene. Increasing this number also increases the highest possible value of expression of a given gene.
As the correction will remove this value from every cell it is adviced not to set this too high and thereby overcorrect the expression in lowly expressing cells. As the correction will remove this value from every cell it is adviced not to set this too high and thereby overcorrect the expression in lowly expressing cells.