# Translation table for microorganism codes — microorganisms.codes • AMR (for R)
A data set containing commonly used codes for microorganisms, from laboratory systems and WHONET. Define your own with set_mo_source.

# Translation table for microorganism codes

`microorganisms.codes.Rd`

A data set containing commonly used codes for microorganisms, from laboratory systems and WHONET. Define your own with `set_mo_source`.

    microorganisms.codes

## Format

A `data.frame` with 4,969 observations and 2 variables:

`certe`

  Commonly used code of a microorganism

`mo`

  ID of the microorganism in the `microorganisms` data set

## Catalogue of Life

This package contains the complete taxonomic tree of almost all microorganisms (~65,000 species) from the authoritative and comprehensive Catalogue of Life (http://www.catalogueoflife.org). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.

Click here for more information about the included taxa. The Catalogue of Life releases updates annually; check which version was included in this package with `catalogue_of_life_version()`.

## Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a tutorial about how to conduct AMR analysis, the complete documentation of all functions (which reads a lot easier than here in R) and an example analysis using WHONET data.

## See also

`as.mo` `microorganisms`