# Data set with 423 antibiotics — antibiotics • AMR (for R)
A data set containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDDs. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.

# Data set with 423 antibiotics

`antibiotics.Rd`

A data set containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDDs. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.

    antibiotics

## Format

A `data.frame` with 423 observations and 18 variables:

`atc`

  ATC code, like `J01CR02`

`certe`

  Certe code, like `amcl`

`umcg`

  UMCG code, like `AMCL`

`abbr`

  Abbreviation as used by many countries, used internally by `as.atc`

`official`

  Official name by the WHO, like `"Amoxicillin and beta-lactamase inhibitor"`

`official_nl`

  Official name in the Netherlands, like `"Amoxicilline met enzymremmer"`

`trivial_nl`

  Trivial name in Dutch, like `"Amoxicilline/clavulaanzuur"`

`trade_name`

  Trade name as used by many countries (a total of 294), used internally by `as.atc`

`oral_ddd`

  Defined Daily Dose (DDD), oral treatment

`oral_units`

  Units of `ddd_units`

`iv_ddd`

  Defined Daily Dose (DDD), parenteral treatment

`iv_units`

  Units of `iv_ddd`

`atc_group1`

  ATC group, like `"Macrolides, lincosamides and streptogramins"`

`atc_group2`

  Subgroup of `atc_group1`, like `"Macrolides"`

`atc_group1_nl`

  ATC group in Dutch, like `"Macroliden, lincosamiden en streptograminen"`

`atc_group2_nl`

  Subgroup of `atc_group1` in Dutch, like `"Macroliden"`

`useful_gramnegative`

  `FALSE` if not useful according to EUCAST, `NA` otherwise (see Source)

`useful_grampositive`

  `FALSE` if not useful according to EUCAST, `NA` otherwise (see Source)

## Source

- World Health Organization: https://www.whocc.no/atc_ddd_index/
- EUCAST - Expert rules intrinsic exceptional V3.1
- MOLIS (LIS of Certe): https://www.certe.nl
- GLIMS (LIS of UMCG): https://www.umcg.nl

## Read more on our website!

On our website https://msberends.gitlab.io/AMR you can find a omprehensive tutorial about how to conduct AMR analysis and find the complete documentation of all functions, which reads a lot easier than in R.

## See also

`microorganisms`