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# Data Set Denoting Bacterial Intrinsic Resistance

Source: `R/data.R`
`intrinsic_resistant.Rd`

Data set containing 'EUCAST Expected Resistant Phenotypes' of all bug-drug combinations between the microorganisms and antimicrobials data sets.

## Usage

    intrinsic_resistant

## Format

A tibble with 294 079 observations and 2 variables:

- `mo`
  Microorganism ID which occurs in `microorganisms$mo`. Names can be retrieved using `mo_name()`.

- `ab`
  Antimicrobial ID which occurs in `antimicrobials$ab`. Names can be retrieved using `ab_name()`.

## Details

This data set is currently based on 'EUCAST Expected Resistant Phenotypes' v1.2 (2023).

This data set is internally used by:

- `not_intrinsic_resistant()` (an antimicrobial selector)

- `mo_is_intrinsic_resistant()`

- `wisca()` to model \(\beta(1, 9999)\) for resistant bug-drug combinations, per doi:10.1093/jac/dkv397

## Download Our Reference Data

All reference data sets in the AMR package - including information on microorganisms, antimicrobials, and clinical breakpoints - are freely available for download in multiple formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata.

For maximum compatibility, we also provide machine-readable, tab-separated plain text files suitable for use in any software, including laboratory information systems.

Visit our website for direct download links, or explore the actual files in our GitHub repository.

## Examples

    intrinsic_resistant
    #> # A tibble: 294,079 × 2
    #>    mo          ab
    #>    <mo>        <ab>
    #>  1 B_GRAMP     ATM
    #>  2 B_GRAMP     COL
    #>  3 B_GRAMP     NAL
    #>  4 B_GRAMP     PLB
    #>  5 B_GRAMP     TEM
    #>  6 B_ANAER-POS ATM
    #>  7 B_ANAER-POS COL
    #>  8 B_ANAER-POS NAL
    #>  9 B_ANAER-POS PLB
    #> 10 B_ANAER-POS TEM
    #> # ℹ 294,069 more rows