AMR/tests/testthat/test-ab_property.R

65 lines
3.2 KiB
R
Raw Normal View History

# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
2019-01-02 23:24:07 +01:00
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
# #
2019-01-02 23:24:07 +01:00
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
2019-04-05 18:47:39 +02:00
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
2019-05-10 16:44:59 +02:00
context("ab_property.R")
2018-03-27 17:43:42 +02:00
2019-05-10 16:44:59 +02:00
test_that("ab_property works", {
2018-04-30 16:24:11 +02:00
2019-05-10 16:44:59 +02:00
expect_identical(ab_name("AMX"), "Amoxicillin")
expect_identical(as.character(ab_atc("AMX")), "J01CA04")
expect_identical(ab_cid("AMX"), as.integer(33613))
2019-05-10 16:44:59 +02:00
expect_equal(class(ab_tradenames("AMX")), "character")
expect_equal(class(ab_tradenames(c("AMX", "AMX"))), "list")
2019-05-10 16:44:59 +02:00
expect_identical(ab_group("AMX"), "Beta-lactams/penicillins")
expect_identical(ab_atc_group1("AMX"), "Beta-lactam antibacterials, penicillins")
expect_identical(ab_atc_group2("AMX"), "Penicillins with extended spectrum")
2019-05-10 16:44:59 +02:00
expect_identical(ab_name("Fluclox"), "Flucloxacillin")
expect_identical(ab_name("fluklox"), "Flucloxacillin")
expect_identical(ab_name("floxapen"), "Flucloxacillin")
2019-10-11 17:21:02 +02:00
expect_identical(ab_name(21319), "Flucloxacillin")
2019-05-10 16:44:59 +02:00
expect_identical(ab_name("J01CF05"), "Flucloxacillin")
2019-05-10 16:44:59 +02:00
expect_identical(ab_ddd("AMX", "oral"), 1)
2019-10-11 17:21:02 +02:00
expect_identical(ab_ddd("AMX", "oral", units = TRUE), "g")
2019-05-10 16:44:59 +02:00
expect_identical(ab_ddd("AMX", "iv"), 1)
2019-10-11 17:21:02 +02:00
expect_identical(ab_ddd("AMX", "iv", units = TRUE), "g")
2019-01-29 00:06:50 +01:00
2019-05-10 16:44:59 +02:00
expect_identical(ab_name(x = c("AMC", "PLB")), c("Amoxicillin/clavulanic acid", "Polymyxin B"))
expect_identical(ab_name(x = c("AMC", "PLB"), tolower = TRUE),
c("amoxicillin/clavulanic acid", "polymyxin B"))
2019-05-16 21:20:00 +02:00
expect_equal(class(ab_info("AMX")), "list")
2019-05-10 16:44:59 +02:00
expect_error(ab_property("amox", "invalid property"))
expect_error(ab_name("amox", language = "INVALID"))
expect_output(print(ab_name("amox", language = NULL)))
2020-01-26 20:20:00 +01:00
expect_equal(ab_name("21066-6", language = NULL), "Ampicillin")
expect_equal(ab_loinc("ampicillin"),
c("21066-6", "3355-5", "33562-0", "33919-2", "43883-8", "43884-6", "87604-5"))
expect_true(ab_url("AMX") %like% "whocc.no")
expect_warning(ab_url("ASP"))
})