2018-12-23 21:26:21 +01:00
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
< html lang = "en" >
< head >
< meta charset = "utf-8" >
< meta http-equiv = "X-UA-Compatible" content = "IE=edge" >
< meta name = "viewport" content = "width=device-width, initial-scale=1.0" >
2018-12-29 22:24:19 +01:00
< title > Properties of an ATC code — atc_property • AMR (for R)< / title >
<!-- favicons -->
< link rel = "icon" type = "image/png" sizes = "16x16" href = "../favicon-16x16.png" >
< link rel = "icon" type = "image/png" sizes = "32x32" href = "../favicon-32x32.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "180x180" href = "../apple-touch-icon.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "120x120" href = "../apple-touch-icon-120x120.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "76x76" href = "../apple-touch-icon-76x76.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "60x60" href = "../apple-touch-icon-60x60.png" / >
2018-12-23 21:26:21 +01:00
<!-- jquery -->
< script src = "https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity = "sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin = "anonymous" > < / script >
<!-- Bootstrap -->
2018-12-29 22:24:19 +01:00
< link href = "https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.3.7/flatly/bootstrap.min.css" rel = "stylesheet" crossorigin = "anonymous" / >
2018-12-23 21:26:21 +01:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity = "sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin = "anonymous" > < / script >
<!-- Font Awesome icons -->
< link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css" integrity = "sha256-eZrrJcwDc/3uDhsdt61sL2oOBY362qM3lon1gyExkL0=" crossorigin = "anonymous" / >
<!-- clipboard.js -->
< script src = "https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity = "sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin = "anonymous" > < / script >
<!-- sticky kit -->
< script src = "https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity = "sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin = "anonymous" > < / script >
<!-- pkgdown -->
< link href = "../pkgdown.css" rel = "stylesheet" >
< script src = "../pkgdown.js" > < / script >
2018-12-29 22:24:19 +01:00
<!-- docsearch -->
< script src = "../docsearch.js" > < / script >
< link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/docsearch.js/2.6.1/docsearch.min.css" integrity = "sha256-QOSRU/ra9ActyXkIBbiIB144aDBdtvXBcNc3OTNuX/Q=" crossorigin = "anonymous" / >
< link href = "../docsearch.css" rel = "stylesheet" >
< script src = "https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/jquery.mark.min.js" integrity = "sha256-4HLtjeVgH0eIB3aZ9mLYF6E8oU5chNdjU6p6rrXpl9U=" crossorigin = "anonymous" > < / script >
2018-12-23 21:26:21 +01:00
2018-12-29 22:24:19 +01:00
< link href = "../extra.css" rel = "stylesheet" >
< script src = "../extra.js" > < / script >
2018-12-23 21:26:21 +01:00
< meta property = "og:title" content = "Properties of an ATC code — atc_property" / >
< meta property = "og:description" content = "Gets data from the WHO to determine properties of an ATC (e.g. an antibiotic) like name, defined daily dose (DDD) or standard unit. This function requires an internet connection." / >
2018-12-29 22:24:19 +01:00
< meta property = "og:image" content = "https://msberends.gitlab.io/logo.png" / >
2018-12-23 21:26:21 +01:00
< meta name = "twitter:card" content = "summary" / >
<!-- mathjax -->
< script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity = "sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin = "anonymous" > < / script >
< script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity = "sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin = "anonymous" > < / script >
<!-- [if lt IE 9]>
< script src = "https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js" > < / script >
< script src = "https://oss.maxcdn.com/respond/1.4.2/respond.min.js" > < / script >
<![endif]-->
< / head >
< body >
< div class = "container template-reference-topic" >
< header >
< div class = "navbar navbar-default navbar-fixed-top" role = "navigation" >
< div class = "container" >
< div class = "navbar-header" >
< button type = "button" class = "navbar-toggle collapsed" data-toggle = "collapse" data-target = "#navbar" aria-expanded = "false" >
< span class = "sr-only" > Toggle navigation< / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< / button >
< span class = "navbar-brand" >
2018-12-29 22:24:19 +01:00
< a class = "navbar-link" href = "../index.html" > AMR (for R)< / a >
< span class = "version label label-default" data-toggle = "tooltip" data-placement = "bottom" title = "Released version" > 0.5.0.9008< / span >
2018-12-23 21:26:21 +01:00
< / span >
< / div >
< div id = "navbar" class = "navbar-collapse collapse" >
< ul class = "nav navbar-nav" >
< li >
< a href = "../index.html" >
2018-12-29 22:24:19 +01:00
< span class = "fa fa-home" > < / span >
2018-12-23 21:26:21 +01:00
2018-12-29 22:24:19 +01:00
Home
2018-12-23 21:26:21 +01:00
< / a >
< / li >
< li >
2018-12-29 22:24:19 +01:00
< a href = "../articles/AMR.html" >
< span class = "fa fa-directions" > < / span >
Get Started
< / a >
2018-12-23 21:26:21 +01:00
< / li >
< li >
2018-12-29 22:24:19 +01:00
< a href = "../reference/" >
< span class = "fa fa-book-open" > < / span >
Manual
< / a >
< / li >
< li >
< a href = "../authors.html" >
< span class = "fa fa-users" > < / span >
Authors
< / a >
2018-12-23 21:26:21 +01:00
< / li >
2018-12-29 22:24:19 +01:00
< li >
< a href = "../news/" >
< span class = "far fa far fa-newspaper" > < / span >
2018-12-23 21:26:21 +01:00
2018-12-29 22:24:19 +01:00
Changelog
2018-12-23 21:26:21 +01:00
< / a >
< / li >
< li >
2018-12-29 22:24:19 +01:00
< a href = "https://gitlab.com/msberends/AMR" >
< span class = "fab fa fab fa-gitlab" > < / span >
Source Code
< / a >
2018-12-23 21:26:21 +01:00
< / li >
< / ul >
< ul class = "nav navbar-nav navbar-right" >
2018-12-29 22:24:19 +01:00
< li >
< a href = "../LICENSE-text.html" >
< span class = "fa fa-book" > < / span >
Licence
< / a >
< / li >
2018-12-23 21:26:21 +01:00
< / ul >
2018-12-29 22:24:19 +01:00
< form class = "navbar-form navbar-right" role = "search" >
< div class = "form-group" >
< input type = "search" class = "form-control" name = "search-input" id = "search-input" placeholder = "Search..." aria-label = "Search for..." autocomplete = "off" >
< / div >
< / form >
2018-12-23 21:26:21 +01:00
< / div > <!-- /.nav - collapse -->
< / div > <!-- /.container -->
< / div > <!-- /.navbar -->
< / header >
< div class = "row" >
< div class = "col-md-9 contents" >
< div class = "page-header" >
< h1 > Properties of an ATC code< / h1 >
< div class = "hidden name" > < code > atc_property.Rd< / code > < / div >
< / div >
< div class = "ref-description" >
< p > Gets data from the WHO to determine properties of an ATC (e.g. an antibiotic) like name, defined daily dose (DDD) or standard unit. < br / > < strong > This function requires an internet connection.< / strong > < / p >
< / div >
< pre class = "usage" > < span class = 'fu' > atc_property< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > property< / span > , < span class = 'kw' > administration< / span > < span class = 'kw' > =< / span > < span class = 'st' > "O"< / span > ,
< span class = 'kw' > url< / span > < span class = 'kw' > =< / span > < span class = 'st' > "https://www.whocc.no/atc_ddd_index/?code=%s& showdescription=no"< / span > )
< span class = 'fu' > atc_groups< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > ...< / span > )
< span class = 'fu' > atc_ddd< / span > (< span class = 'no' > atc_code< / span > , < span class = 'no' > ...< / span > )< / pre >
< h2 class = "hasAnchor" id = "arguments" > < a class = "anchor" href = "#arguments" > < / a > Arguments< / h2 >
< table class = "ref-arguments" >
< colgroup > < col class = "name" / > < col class = "desc" / > < / colgroup >
< tr >
< th > atc_code< / th >
< td > < p > a character or character vector with ATC code(s) of antibiotic(s)< / p > < / td >
< / tr >
< tr >
< th > property< / th >
< td > < p > property of an ATC code. Valid values are < code > "ATC"< / code > , < code > "Name"< / code > , < code > "DDD"< / code > , < code > "U"< / code > (< code > "unit"< / code > ), < code > "Adm.R"< / code > , < code > "Note"< / code > and < code > groups< / code > . For this last option, all hierarchical groups of an ATC code will be returned, see Examples.< / p > < / td >
< / tr >
< tr >
< th > administration< / th >
< td > < p > type of administration when using < code > property = "Adm.R"< / code > , see Details< / p > < / td >
< / tr >
< tr >
< th > url< / th >
< td > < p > url of website of the WHO. The sign < code > %s< / code > can be used as a placeholder for ATC codes.< / p > < / td >
< / tr >
< tr >
< th > ...< / th >
< td > < p > parameters to pass on to < code > atc_property< / code > < / p > < / td >
< / tr >
< / table >
< h2 class = "hasAnchor" id = "source" > < a class = "anchor" href = "#source" > < / a > Source< / h2 >
< p > < a href = 'https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/' > https://www.whocc.no/atc_ddd_alterations__cumulative/ddd_alterations/abbrevations/< / a > < / p >
< h2 class = "hasAnchor" id = "details" > < a class = "anchor" href = "#details" > < / a > Details< / h2 >
< p > Options for parameter < code > administration< / code > :< / p > < ul >
< li > < p > < code > "Implant"< / code > = Implant< / p > < / li >
< li > < p > < code > "Inhal"< / code > = Inhalation< / p > < / li >
< li > < p > < code > "Instill"< / code > = Instillation< / p > < / li >
< li > < p > < code > "N"< / code > = nasal< / p > < / li >
< li > < p > < code > "O"< / code > = oral< / p > < / li >
< li > < p > < code > "P"< / code > = parenteral< / p > < / li >
< li > < p > < code > "R"< / code > = rectal< / p > < / li >
< li > < p > < code > "SL"< / code > = sublingual/buccal< / p > < / li >
< li > < p > < code > "TD"< / code > = transdermal< / p > < / li >
< li > < p > < code > "V"< / code > = vaginal< / p > < / li >
< / ul >
< p > Abbreviations of return values when using < code > property = "U"< / code > (unit):< / p > < ul >
< li > < p > < code > "g"< / code > = gram< / p > < / li >
< li > < p > < code > "mg"< / code > = milligram< / p > < / li >
< li > < p > < code > "mcg"< / code > = microgram< / p > < / li >
< li > < p > < code > "U"< / code > = unit< / p > < / li >
< li > < p > < code > "TU"< / code > = thousand units< / p > < / li >
< li > < p > < code > "MU"< / code > = million units< / p > < / li >
< li > < p > < code > "mmol"< / code > = millimole< / p > < / li >
< li > < p > < code > "ml"< / code > = milliliter (e.g. eyedrops)< / p > < / li >
< / ul >
< h2 class = "hasAnchor" id = "examples" > < a class = "anchor" href = "#examples" > < / a > Examples< / h2 >
2018-12-29 22:24:19 +01:00
< pre class = "examples" > < span class = 'co' > # NOT RUN {< / span >
< span class = 'co' > # What's the ATC of amoxicillin?< / span >
2018-12-31 01:48:53 +01:00
< span class = 'fu' > < a href = 'as.atc.html' > guess_atc< / a > < / span > (< span class = 'st' > "Amoxicillin"< / span > )
2018-12-29 22:24:19 +01:00
< span class = 'co' > # [1] "J01CA04"< / span >
2018-12-23 21:26:21 +01:00
< span class = 'co' > # oral DDD (Defined Daily Dose) of amoxicillin< / span >
2018-12-29 22:24:19 +01:00
< span class = 'fu' > atc_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'st' > "DDD"< / span > , < span class = 'st' > "O"< / span > )
< span class = 'co' > # parenteral DDD (Defined Daily Dose) of amoxicillin< / span >
< span class = 'fu' > atc_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'st' > "DDD"< / span > , < span class = 'st' > "P"< / span > )
< span class = 'fu' > atc_property< / span > (< span class = 'st' > "J01CA04"< / span > , < span class = 'kw' > property< / span > < span class = 'kw' > =< / span > < span class = 'st' > "groups"< / span > ) < span class = 'co' > # search hierarchical groups of amoxicillin< / span >
< span class = 'co' > # [1] "ANTIINFECTIVES FOR SYSTEMIC USE"< / span >
< span class = 'co' > # [2] "ANTIBACTERIALS FOR SYSTEMIC USE"< / span >
< span class = 'co' > # [3] "BETA-LACTAM ANTIBACTERIALS, PENICILLINS"< / span >
< span class = 'co' > # [4] "Penicillins with extended spectrum"< / span >
< span class = 'co' > # }< / span > < / pre >
2018-12-23 21:26:21 +01:00
< / div >
< div class = "col-md-3 hidden-xs hidden-sm" id = "sidebar" >
< h2 > Contents< / h2 >
< ul class = "nav nav-pills nav-stacked" >
< li > < a href = "#arguments" > Arguments< / a > < / li >
< li > < a href = "#source" > Source< / a > < / li >
< li > < a href = "#details" > Details< / a > < / li >
< li > < a href = "#examples" > Examples< / a > < / li >
< / ul >
< / div >
< / div >
< footer >
< div class = "copyright" >
2018-12-29 22:24:19 +01:00
< p > Developed by < a href = 'https://www.rug.nl/staff/m.s.berends/' > Matthijs S. Berends< / a > , < a href = 'https://www.rug.nl/staff/c.f.luz/' > Christian F. Luz< / a > , < a href = 'https://www.rug.nl/staff/c.glasner/' > Corinna Glasner< / a > , < a href = 'https://www.rug.nl/staff/a.w.friedrich/' > Alex W. Friedrich< / a > , < a href = 'https://www.rug.nl/staff/b.sinha/' > Bhanu N. M. Sinha< / a > .< / p >
2018-12-23 21:26:21 +01:00
< / div >
< div class = "pkgdown" >
< p > Site built with < a href = "https://pkgdown.r-lib.org/" > pkgdown< / a > 1.3.0.< / p >
< / div >
< / footer >
< / div >
2018-12-29 22:24:19 +01:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/docsearch.js/2.6.1/docsearch.min.js" integrity = "sha256-GKvGqXDznoRYHCwKXGnuchvKSwmx9SRMrZOTh2g4Sb0=" crossorigin = "anonymous" > < / script >
< script >
docsearch({
apiKey: 'f737050abfd4d726c63938e18f8c496e',
indexName: 'amr',
inputSelector: 'input#search-input.form-control',
transformData: function(hits) {
return hits.map(function (hit) {
hit.url = updateHitURL(hit);
return hit;
});
}
});
< / script >
2018-12-23 21:26:21 +01:00
< / body >
< / html >
