AMR/tests/testthat/test-atc.R

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context("atc.R")
test_that("atc_property works", {
expect_equal(tolower(atc_property("J01CA04", property = "Name")), "amoxicillin")
expect_equivalent(atc_property("J01CA04", "DDD"), 1)
})
test_that("abname works", {
expect_equal(abname("AMOX"), "Amoxicillin")
expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
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expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
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expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
expect_equal(abname("amox", from = 'molis'), "Amoxicillin")
expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
})
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test_that("guess_bactid works", {
expect_identical(guess_bactid(c("E. coli", "H. influenzae")), c("ESCCOL", "HAEINF"))
expect_equal(guess_bactid("Escherichia coli"), "ESCCOL")
expect_equal(guess_bactid("Negative rods"), "GNR")
expect_equal(guess_bactid(c("stau",
"STAU",
"staaur",
"S. aureus",
"S aureus",
"Staphylococcus aureus",
"MRSA",
"VISA")),
rep("STAAUR", 8))
})
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test_that("guess_atc works", {
expect_equal(guess_atc(c("J01FA01",
"Erythromycin",
"eryt",
"ERYT",
"ERY",
"Erythrocin",
"Eryzole",
"Pediamycin")),
rep("J01FA01", 8))
})