2018-12-29 22:24:19 +01:00
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
< html lang = "en" >
< head >
< meta charset = "utf-8" >
< meta http-equiv = "X-UA-Compatible" content = "IE=edge" >
< meta name = "viewport" content = "width=device-width, initial-scale=1.0" >
2019-12-22 11:43:38 +01:00
< title > Citation and Authors • AMR (for R)< / title >
2018-12-29 22:24:19 +01:00
<!-- favicons -->
< link rel = "icon" type = "image/png" sizes = "16x16" href = "favicon-16x16.png" >
< link rel = "icon" type = "image/png" sizes = "32x32" href = "favicon-32x32.png" >
< link rel = "apple-touch-icon" type = "image/png" sizes = "180x180" href = "apple-touch-icon.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "120x120" href = "apple-touch-icon-120x120.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "76x76" href = "apple-touch-icon-76x76.png" / >
< link rel = "apple-touch-icon" type = "image/png" sizes = "60x60" href = "apple-touch-icon-60x60.png" / >
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
<!-- jquery -->
2020-04-13 21:09:56 +02:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity = "sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin = "anonymous" > < / script >
2018-12-29 22:24:19 +01:00
<!-- Bootstrap -->
2020-04-13 21:09:56 +02:00
< link href = "https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel = "stylesheet" crossorigin = "anonymous" / >
2018-12-29 22:24:19 +01:00
2019-09-25 15:43:22 +02:00
2020-04-13 21:09:56 +02:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity = "sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin = "anonymous" > < / script >
<!-- bootstrap - toc -->
< link rel = "stylesheet" href = "bootstrap-toc.css" >
< script src = "bootstrap-toc.js" > < / script >
2018-12-29 22:24:19 +01:00
<!-- Font Awesome icons -->
2020-04-13 21:09:56 +02:00
< link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity = "sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin = "anonymous" / >
< link rel = "stylesheet" href = "https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity = "sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin = "anonymous" / >
2018-12-29 22:24:19 +01:00
<!-- clipboard.js -->
2020-04-13 21:09:56 +02:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity = "sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin = "anonymous" > < / script >
2018-12-29 22:24:19 +01:00
2019-09-25 15:43:22 +02:00
<!-- headroom.js -->
2020-04-13 21:09:56 +02:00
< script src = "https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity = "sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin = "anonymous" > < / script >
< script src = "https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity = "sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin = "anonymous" > < / script >
2018-12-29 22:24:19 +01:00
<!-- pkgdown -->
< link href = "pkgdown.css" rel = "stylesheet" >
< script src = "pkgdown.js" > < / script >
< link href = "extra.css" rel = "stylesheet" >
< script src = "extra.js" > < / script >
2019-12-22 11:43:38 +01:00
< meta property = "og:title" content = "Citation and Authors" / >
2020-09-14 14:08:07 +02:00
< meta property = "og:image" content = "https://msberends.github.io/AMR/logo.png" / >
2018-12-29 22:24:19 +01:00
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
<!-- mathjax -->
< script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity = "sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin = "anonymous" > < / script >
< script src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity = "sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin = "anonymous" > < / script >
<!-- [if lt IE 9]>
< script src = "https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js" > < / script >
< script src = "https://oss.maxcdn.com/respond/1.4.2/respond.min.js" > < / script >
<![endif]-->
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
< / head >
2020-04-13 21:09:56 +02:00
< body data-spy = "scroll" data-target = "#toc" >
2019-12-22 11:43:38 +01:00
< div class = "container template-citation-authors" >
2018-12-29 22:24:19 +01:00
< header >
< div class = "navbar navbar-default navbar-fixed-top" role = "navigation" >
< div class = "container" >
< div class = "navbar-header" >
< button type = "button" class = "navbar-toggle collapsed" data-toggle = "collapse" data-target = "#navbar" aria-expanded = "false" >
< span class = "sr-only" > Toggle navigation< / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< span class = "icon-bar" > < / span >
< / button >
< span class = "navbar-brand" >
< a class = "navbar-link" href = "index.html" > AMR (for R)< / a >
2020-09-19 12:57:51 +02:00
< span class = "version label label-default" data-toggle = "tooltip" data-placement = "bottom" title = "Latest development version" > 1.3.0.9024< / span >
2018-12-29 22:24:19 +01:00
< / span >
< / div >
< div id = "navbar" class = "navbar-collapse collapse" >
< ul class = "nav navbar-nav" >
< li >
< a href = "index.html" >
< span class = "fa fa-home" > < / span >
Home
< / a >
< / li >
2019-01-02 23:24:07 +01:00
< li class = "dropdown" >
< a href = "#" class = "dropdown-toggle" data-toggle = "dropdown" role = "button" aria-expanded = "false" >
< span class = "fa fa-question-circle" > < / span >
How to
2018-12-29 22:24:19 +01:00
2019-01-02 23:24:07 +01:00
< span class = "caret" > < / span >
2018-12-29 22:24:19 +01:00
< / a >
2019-01-02 23:24:07 +01:00
< ul class = "dropdown-menu" role = "menu" >
< li >
< a href = "articles/AMR.html" >
< span class = "fa fa-directions" > < / span >
Conduct AMR analysis
< / a >
< / li >
< li >
2019-02-11 10:27:10 +01:00
< a href = "articles/resistance_predict.html" >
2019-01-02 23:24:07 +01:00
< span class = "fa fa-dice" > < / span >
Predict antimicrobial resistance
2019-01-29 00:06:50 +01:00
< / a >
< / li >
2020-08-16 21:38:42 +02:00
< li >
< a href = "articles/datasets.html" >
< span class = "fa fa-database" > < / span >
2020-09-03 12:31:48 +02:00
Data sets for download / own use
2020-08-16 21:38:42 +02:00
< / a >
< / li >
2020-03-07 21:48:21 +01:00
< li >
< a href = "articles/PCA.html" >
< span class = "fa fa-compress" > < / span >
Conduct principal component analysis for AMR
< / a >
< / li >
2019-05-23 16:58:59 +02:00
< li >
< a href = "articles/MDR.html" >
< span class = "fa fa-skull-crossbones" > < / span >
Determine multi-drug resistance (MDR)
< / a >
< / li >
2019-01-29 00:06:50 +01:00
< li >
< a href = "articles/WHONET.html" >
< span class = "fa fa-globe-americas" > < / span >
Work with WHONET data
2019-01-02 23:24:07 +01:00
< / a >
< / li >
2019-02-14 15:18:17 +01:00
< li >
< a href = "articles/SPSS.html" >
< span class = "fa fa-file-upload" > < / span >
Import data from SPSS/SAS/Stata
< / a >
< / li >
2019-01-02 23:24:07 +01:00
< li >
< a href = "articles/EUCAST.html" >
< span class = "fa fa-exchange-alt" > < / span >
Apply EUCAST rules
< / a >
< / li >
< li >
2019-02-11 10:27:10 +01:00
< a href = "reference/mo_property.html" >
2019-01-02 23:24:07 +01:00
< span class = "fa fa-bug" > < / span >
Get properties of a microorganism
< / a >
< / li >
< li >
2019-05-10 16:44:59 +02:00
< a href = "reference/ab_property.html" >
2019-01-02 23:24:07 +01:00
< span class = "fa fa-capsules" > < / span >
Get properties of an antibiotic
< / a >
< / li >
2019-01-11 20:37:23 +01:00
< li >
< a href = "articles/benchmarks.html" >
< span class = "fa fa-shipping-fast" > < / span >
Other: benchmarks
< / a >
< / li >
2019-01-02 23:24:07 +01:00
< / ul >
2018-12-29 22:24:19 +01:00
< / li >
< li >
2020-07-28 18:39:57 +02:00
< a href = "reference/index.html" >
2018-12-29 22:24:19 +01:00
< span class = "fa fa-book-open" > < / span >
Manual
< / a >
< / li >
< li >
< a href = "authors.html" >
< span class = "fa fa-users" > < / span >
Authors
< / a >
< / li >
< li >
2020-07-28 18:39:57 +02:00
< a href = "news/index.html" >
2018-12-29 22:24:19 +01:00
< span class = "far fa far fa-newspaper" > < / span >
Changelog
< / a >
< / li >
2019-01-02 23:24:07 +01:00
< / ul >
< ul class = "nav navbar-nav navbar-right" >
< li >
2020-07-08 14:48:06 +02:00
< a href = "https://github.com/msberends/AMR" >
< span class = "fab fa fab fa-github" > < / span >
2018-12-29 22:24:19 +01:00
Source Code
< / a >
< / li >
2019-01-02 23:24:07 +01:00
< li >
2020-07-28 18:39:57 +02:00
< a href = "survey.html" >
< span class = "fa fa-clipboard-list" > < / span >
2018-12-29 22:24:19 +01:00
2020-07-28 18:39:57 +02:00
Survey
2018-12-29 22:24:19 +01:00
< / a >
< / li >
< / ul >
< / div > <!-- /.nav - collapse -->
< / div > <!-- /.container -->
< / div > <!-- /.navbar -->
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
< / header >
< div class = "row" >
< div class = "contents col-md-9" >
2019-12-22 11:43:38 +01:00
< div class = "page-header" >
< h1 > Citation< / h1 >
2020-07-08 14:48:06 +02:00
< small class = "dont-index" > Source: < a href = 'https://github.com/msberends/AMR/blob/master/inst/CITATION' > < code > inst/CITATION< / code > < / a > < / small >
2019-12-22 11:43:38 +01:00
< / div >
2020-04-13 21:09:56 +02:00
< p > Berends MS, Luz CF et al. (2019). AMR - An R Package for Working with Antimicrobial Resistance Data. bioRxiv, https://doi.org/10.1101/810622< / p >
2019-12-22 11:43:38 +01:00
< pre > @Article{,
title = {AMR - An R Package for Working with Antimicrobial Resistance Data},
2020-01-08 11:30:33 +01:00
author = {M S Berends and C F Luz and A W Friedrich and B N M Sinha and C J Albers and C Glasner},
2019-12-22 11:43:38 +01:00
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
year = {2019},
url = {https://doi.org/10.1101/810622},
}< / pre >
2018-12-29 22:24:19 +01:00
< div class = "page-header" >
< h1 > Authors< / h1 >
< / div >
< ul class = "list-unstyled" >
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/m.s.berends/' > Matthijs S. Berends< / a > < / strong > . Author, maintainer. < a href = 'https://orcid.org/0000-0001-7620-1800' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2018-12-29 22:24:19 +01:00
< / p >
< / li >
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/c.f.luz/' > Christian F. Luz< / a > < / strong > . Author, contributor. < a href = 'https://orcid.org/0000-0001-5809-5995' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2018-12-29 22:24:19 +01:00
< / p >
< / li >
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/a.w.friedrich/' > Alexander W. Friedrich< / a > < / strong > . Author, thesis advisor. < a href = 'https://orcid.org/0000-0003-4881-038X' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2018-12-29 22:24:19 +01:00
< / p >
< / li >
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/b.sinha/' > Bhanu N. M. Sinha< / a > < / strong > . Author, thesis advisor. < a href = 'https://orcid.org/0000-0003-1634-0010' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2018-12-29 22:24:19 +01:00
< / p >
< / li >
2019-08-14 14:57:06 +02:00
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/c.j.albers/' > Casper J. Albers< / a > < / strong > . Author, thesis advisor. < a href = 'https://orcid.org/0000-0002-9213-6743' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2019-08-14 14:57:06 +02:00
< / p >
< / li >
2018-12-29 22:24:19 +01:00
< li >
2020-04-13 21:09:56 +02:00
< p > < strong > < a href = 'https://www.rug.nl/staff/c.glasner/' > Corinna Glasner< / a > < / strong > . Author, thesis advisor. < a href = 'https://orcid.org/0000-0003-1241-1328' target = 'orcid.widget' aria-label = 'ORCID' > < span class = 'fab fa-orcid orcid' aria-hidden = 'true' > < / span > < / a >
2018-12-29 22:24:19 +01:00
< / p >
< / li >
2019-09-18 15:46:09 +02:00
< li >
2020-01-26 20:38:54 +01:00
< p > < strong > Judith M. Fonville< / strong > . Contributor.
2019-09-18 15:46:09 +02:00
< / p >
< / li >
2019-08-08 15:52:07 +02:00
< li >
2020-01-26 20:38:54 +01:00
< p > < strong > Erwin E. A. Hassing< / strong > . Contributor.
2019-08-08 15:52:07 +02:00
< / p >
< / li >
2019-09-15 22:57:30 +02:00
< li >
2020-01-27 11:05:39 +01:00
< p > < strong > Eric H. L. C. M. Hazenberg< / strong > . Contributor.
2019-09-15 22:57:30 +02:00
< / p >
< / li >
2020-08-14 13:36:10 +02:00
< li >
< p > < strong > Gwen Knight< / strong > . Contributor.
< / p >
< / li >
2019-08-09 14:28:46 +02:00
< li >
< p > < strong > Annick Lenglet< / strong > . Contributor.
< / p >
< / li >
2019-08-08 15:52:07 +02:00
< li >
2020-01-26 20:38:54 +01:00
< p > < strong > Bart C. Meijer< / strong > . Contributor.
2019-08-08 15:52:07 +02:00
< / p >
< / li >
2019-11-04 11:35:34 +01:00
< li >
< p > < strong > Sofia Ny< / strong > . Contributor.
< / p >
< / li >
2019-08-08 15:52:07 +02:00
< li >
< p > < strong > Dennis Souverein< / strong > . Contributor.
< / p >
< / li >
2020-08-14 13:36:10 +02:00
< li >
< p > < strong > Anthony Underwood< / strong > . Contributor.
< / p >
< / li >
2018-12-29 22:24:19 +01:00
< / ul >
< / div >
< / div >
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
< footer >
< div class = "copyright" >
2020-02-17 14:38:01 +01:00
< p > Developed by < a href = 'https://www.rug.nl/staff/m.s.berends/' > Matthijs S. Berends< / a > , < a href = 'https://www.rug.nl/staff/c.f.luz/' > Christian F. Luz< / a > , < a href = 'https://www.rug.nl/staff/a.w.friedrich/' > Alexander W. Friedrich< / a > , < a href = 'https://www.rug.nl/staff/b.sinha/' > Bhanu N. M. Sinha< / a > , < a href = 'https://www.rug.nl/staff/c.j.albers/' > Casper J. Albers< / a > , < a href = 'https://www.rug.nl/staff/c.glasner/' > Corinna Glasner< / a > .< / p >
2018-12-29 22:24:19 +01:00
< / div >
< div class = "pkgdown" >
2020-08-10 12:46:03 +02:00
< p > Site built with < a href = "https://pkgdown.r-lib.org/" > pkgdown< / a > 1.5.1.9000.< / p >
2018-12-29 22:24:19 +01:00
< / div >
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
< / footer >
< / div >
2019-09-25 15:43:22 +02:00
2018-12-29 22:24:19 +01:00
< / body >
< / html >
2019-09-25 15:43:22 +02:00
