mirror of
https://github.com/msberends/AMR.git
synced 2024-12-28 05:26:12 +01:00
24 lines
818 B
R
24 lines
818 B
R
|
context("first_isolates.R")
|
||
|
|
|
||
|
|
test_that("keyantibiotics work", {
|
||
|
|
expect_equal(length(key_antibiotics(septic_patients, info = FALSE)), nrow(septic_patients))
|
||
|
|
expect_true(key_antibiotics_equal("SSS", "SSS"))
|
||
|
|
expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
|
||
|
|
expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
|
||
|
|
})
|
||
|
|
|
||
|
|
|
||
|
|
test_that("guess_bactid works", {
|
||
|
|
expect_equal(guess_bactid("E. coli"), "ESCCOL")
|
||
|
|
expect_equal(guess_bactid("Escherichia coli"), "ESCCOL")
|
||
|
|
})
|
||
|
|
|
||
|
|
test_that("first isolates work", {
|
||
|
|
# septic_patients contains 1960 out of 2000 first isolates
|
||
|
|
expect_equal(sum(first_isolate(septic_patients,
|
||
|
|
"date",
|
||
|
|
"patient_id",
|
||
|
|
"bactid",
|
||
|
|
info = FALSE)), 1960)
|
||
|
|
})
|