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< img src = "../logo.svg" class = "logo" alt = "" > < h1 > Split Ages into Age Groups< / h1 >
< small class = "dont-index" > Source: < a href = "https://github.com/msberends/AMR/blob/HEAD/R/age.R" class = "external-link" > < code > R/age.R< / code > < / a > < / small >
< div class = "d-none name" > < code > age_groups.Rd< / code > < / div >
< / div >
< div class = "ref-description section level2" >
< p > Split ages into age groups defined by the < code > split< / code > argument. This allows for easier demographic (antimicrobial resistance) analysis.< / p >
< / div >
< div class = "section level2" >
< h2 id = "ref-usage" > Usage< a class = "anchor" aria-label = "anchor" href = "#ref-usage" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > x< / span > , split_at < span class = "op" > =< / span > < span class = "fu" > < a href = "https://rdrr.io/r/base/c.html" class = "external-link" > c< / a > < / span > < span class = "op" > (< / span > < span class = "fl" > 12< / span > , < span class = "fl" > 25< / span > , < span class = "fl" > 55< / span > , < span class = "fl" > 75< / span > < span class = "op" > )< / span > , na.rm < span class = "op" > =< / span > < span class = "cn" > FALSE< / span > < span class = "op" > )< / span > < / span > < / code > < / pre > < / div >
< / div >
< div class = "section level2" >
< h2 id = "arguments" > Arguments< a class = "anchor" aria-label = "anchor" href = "#arguments" > < / a > < / h2 >
< dl > < dt > x< / dt >
< dd > < p > age, e.g. calculated with < code > < a href = "age.html" > age()< / a > < / code > < / p > < / dd >
< dt > split_at< / dt >
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< dd > < p > values to split < code > x< / code > at - the default is age groups 0-11, 12-24, 25-54, 55-74 and 75+. See < em > Details< / em > .< / p > < / dd >
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< dt > na.rm< / dt >
< dd > < p > a < a href = "https://rdrr.io/r/base/logical.html" class = "external-link" > logical< / a > to indicate whether missing values should be removed< / p > < / dd >
< / dl > < / div >
< div class = "section level2" >
< h2 id = "value" > Value< a class = "anchor" aria-label = "anchor" href = "#value" > < / a > < / h2 >
< p > Ordered < a href = "https://rdrr.io/r/base/factor.html" class = "external-link" > factor< / a > < / p >
< / div >
< div class = "section level2" >
< h2 id = "details" > Details< a class = "anchor" aria-label = "anchor" href = "#details" > < / a > < / h2 >
< p > To split ages, the input for the < code > split_at< / code > argument can be:< / p > < ul > < li > < p > A < a href = "https://rdrr.io/r/base/numeric.html" class = "external-link" > numeric< / a > vector. A value of e.g. < code > c(10, 20)< / code > will split < code > x< / code > on 0-9, 10-19 and 20+. A value of only < code > 50< / code > will split < code > x< / code > on 0-49 and 50+.
The default is to split on young children (0-11), youth (12-24), young adults (25-54), middle-aged adults (55-74) and elderly (75+).< / p > < / li >
< li > < p > A character:< / p > < ul > < li > < p > < code > "children"< / code > or < code > "kids"< / code > , equivalent of: < code > c(0, 1, 2, 4, 6, 13, 18)< / code > . This will split on 0, 1, 2-3, 4-5, 6-12, 13-17 and 18+.< / p > < / li >
< li > < p > < code > "elderly"< / code > or < code > "seniors"< / code > , equivalent of: < code > c(65, 75, 85)< / code > . This will split on 0-64, 65-74, 75-84, 85+.< / p > < / li >
< li > < p > < code > "fives"< / code > , equivalent of: < code > 1:20 * 5< / code > . This will split on 0-4, 5-9, ..., 95-99, 100+.< / p > < / li >
< li > < p > < code > "tens"< / code > , equivalent of: < code > 1:10 * 10< / code > . This will split on 0-9, 10-19, ..., 90-99, 100+.< / p > < / li >
< / ul > < / li >
< / ul > < / div >
< div class = "section level2" >
< h2 id = "see-also" > See also< a class = "anchor" aria-label = "anchor" href = "#see-also" > < / a > < / h2 >
< div class = "dont-index" > < p > To determine ages, based on one or more reference dates, use the < code > < a href = "age.html" > age()< / a > < / code > function.< / p > < / div >
< / div >
< div class = "section level2" >
< h2 id = "ref-examples" > Examples< a class = "anchor" aria-label = "anchor" href = "#ref-examples" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span class = "r-in" > < span > < span class = "va" > ages< / span > < span class = "op" > < -< / span > < span class = "fu" > < a href = "https://rdrr.io/r/base/c.html" class = "external-link" > c< / a > < / span > < span class = "op" > (< / span > < span class = "fl" > 3< / span > , < span class = "fl" > 8< / span > , < span class = "fl" > 16< / span > , < span class = "fl" > 54< / span > , < span class = "fl" > 31< / span > , < span class = "fl" > 76< / span > , < span class = "fl" > 101< / span > , < span class = "fl" > 43< / span > , < span class = "fl" > 21< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # split into 0-49 and 50+< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "fl" > 50< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-49 0-49 0-49 50+ 0-49 50+ 50+ 0-49 0-49< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > Levels: 0-49 < 50+< / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # split into 0-19, 20-49 and 50+< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "fu" > < a href = "https://rdrr.io/r/base/c.html" class = "external-link" > c< / a > < / span > < span class = "op" > (< / span > < span class = "fl" > 20< / span > , < span class = "fl" > 50< / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-19 0-19 0-19 50+ 20-49 50+ 50+ 20-49 20-49< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > Levels: 0-19 < 20-49 < 50+< / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # split into groups of ten years< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "fl" > 1< / span > < span class = "op" > :< / span > < span class = "fl" > 10< / span > < span class = "op" > *< / span > < span class = "fl" > 10< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-9 0-9 10-19 50-59 30-39 70-79 100+ 40-49 20-29< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > 11 Levels: 0-9 < 10-19 < 20-29 < 30-39 < 40-49 < 50-59 < 60-69 < ... < 100+< / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , split_at < span class = "op" > =< / span > < span class = "st" > "tens"< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-9 0-9 10-19 50-59 30-39 70-79 100+ 40-49 20-29< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > 11 Levels: 0-9 < 10-19 < 20-29 < 30-39 < 40-49 < 50-59 < 60-69 < ... < 100+< / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # split into groups of five years< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "fl" > 1< / span > < span class = "op" > :< / span > < span class = "fl" > 20< / span > < span class = "op" > *< / span > < span class = "fl" > 5< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-4 5-9 15-19 50-54 30-34 75-79 100+ 40-44 20-24< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > 21 Levels: 0-4 < 5-9 < 10-14 < 15-19 < 20-24 < 25-29 < 30-34 < ... < 100+< / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , split_at < span class = "op" > =< / span > < span class = "st" > "fives"< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 0-4 5-9 15-19 50-54 30-34 75-79 100+ 40-44 20-24< / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > 21 Levels: 0-4 < 5-9 < 10-14 < 15-19 < 20-24 < 25-29 < 30-34 < ... < 100+< / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # split specifically for children< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "fu" > < a href = "https://rdrr.io/r/base/c.html" class = "external-link" > c< / a > < / span > < span class = "op" > (< / span > < span class = "fl" > 1< / span > , < span class = "fl" > 2< / span > , < span class = "fl" > 4< / span > , < span class = "fl" > 6< / span > , < span class = "fl" > 13< / span > , < span class = "fl" > 18< / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 2-3 6-12 13-17 18+ 18+ 18+ 18+ 18+ 18+ < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > Levels: 0 < 1 < 2-3 < 4-5 < 6-12 < 13-17 < 18+< / span >
< span class = "r-in" > < span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > ages< / span > , < span class = "st" > "children"< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > [1] 2-3 6-12 13-17 18+ 18+ 18+ 18+ 18+ 18+ < / span >
< span class = "r-out co" > < span class = "r-pr" > #> < / span > Levels: 0 < 1 < 2-3 < 4-5 < 6-12 < 13-17 < 18+< / span >
< span class = "r-in" > < span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # \donttest{< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # resistance of ciprofloxacin per age group< / span > < / span > < / span >
2022-11-05 08:26:59 +01:00
< span class = "r-in" > < span > < span class = "kw" > if< / span > < span class = "op" > (< / span > < span class = "kw" > < a href = "https://rdrr.io/r/base/library.html" class = "external-link" > require< / a > < / span > < span class = "op" > (< / span > < span class = "st" > < a href = "https://dplyr.tidyverse.org" class = "external-link" > "dplyr"< / a > < / span > < span class = "op" > )< / span > < span class = "op" > & & < / span > < span class = "kw" > < a href = "https://rdrr.io/r/base/library.html" class = "external-link" > require< / a > < / span > < span class = "op" > (< / span > < span class = "st" > < a href = "https://ggplot2.tidyverse.org" class = "external-link" > "ggplot2"< / a > < / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < span class = "op" > {< / span > < / span > < / span >
2022-08-21 16:59:35 +02:00
< span class = "r-in" > < span > < span class = "va" > example_isolates< / span > < span class = "op" > < a href = "https://magrittr.tidyverse.org/reference/pipe.html" class = "external-link" > %> %< / a > < / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > < a href = "first_isolate.html" > filter_first_isolate< / a > < / span > < span class = "op" > (< / span > < span class = "op" > )< / span > < span class = "op" > < a href = "https://magrittr.tidyverse.org/reference/pipe.html" class = "external-link" > %> %< / a > < / span > < / span > < / span >
2022-08-28 22:45:38 +02:00
< span class = "r-in" > < span > < span class = "fu" > < a href = "https://dplyr.tidyverse.org/reference/filter.html" class = "external-link" > filter< / a > < / span > < span class = "op" > (< / span > < span class = "va" > mo< / span > < span class = "op" > ==< / span > < span class = "fu" > < a href = "as.mo.html" > as.mo< / a > < / span > < span class = "op" > (< / span > < span class = "st" > "Escherichia coli"< / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < span class = "op" > < a href = "https://magrittr.tidyverse.org/reference/pipe.html" class = "external-link" > %> %< / a > < / span > < / span > < / span >
2022-08-21 16:59:35 +02:00
< span class = "r-in" > < span > < span class = "fu" > < a href = "https://dplyr.tidyverse.org/reference/group_by.html" class = "external-link" > group_by< / a > < / span > < span class = "op" > (< / span > age_group < span class = "op" > =< / span > < span class = "fu" > age_groups< / span > < span class = "op" > (< / span > < span class = "va" > age< / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < span class = "op" > < a href = "https://magrittr.tidyverse.org/reference/pipe.html" class = "external-link" > %> %< / a > < / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > < a href = "https://dplyr.tidyverse.org/reference/select.html" class = "external-link" > select< / a > < / span > < span class = "op" > (< / span > < span class = "va" > age_group< / span > , < span class = "va" > CIP< / span > < span class = "op" > )< / span > < span class = "op" > < a href = "https://magrittr.tidyverse.org/reference/pipe.html" class = "external-link" > %> %< / a > < / span > < / span > < / span >
2023-01-21 23:53:21 +01:00
< span class = "r-in" > < span > < span class = "fu" > < a href = "ggplot_sir.html" > ggplot_sir< / a > < / span > < span class = "op" > (< / span > < / span > < / span >
2022-08-28 22:45:38 +02:00
< span class = "r-in" > < span > x < span class = "op" > =< / span > < span class = "st" > "age_group"< / span > ,< / span > < / span >
< span class = "r-in" > < span > minimum < span class = "op" > =< / span > < span class = "fl" > 0< / span > ,< / span > < / span >
< span class = "r-in" > < span > x.title < span class = "op" > =< / span > < span class = "st" > "Age Group"< / span > ,< / span > < / span >
< span class = "r-in" > < span > title < span class = "op" > =< / span > < span class = "st" > "Ciprofloxacin resistance per age group"< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "op" > )< / span > < / span > < / span >
2022-08-21 16:59:35 +02:00
< span class = "r-in" > < span > < span class = "op" > }< / span > < / span > < / span >
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< span class = "r-msg co" > < span class = "r-pr" > #> < / span > Loading required package: ggplot2< / span >
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< span class = "r-plt img" > < img src = "age_groups-1.png" alt = "" width = "700" height = "433" > < / span >
< span class = "r-in" > < span > < span class = "co" > # }< / span > < / span > < / span >
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2024-04-23 10:39:01 +02:00
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2024-04-23 10:39:01 +02:00
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