2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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2019-01-02 23:24:07 +01:00
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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2018-12-16 22:45:12 +01:00
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# #
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# LICENCE #
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2019-01-02 23:24:07 +01:00
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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2018-12-16 22:45:12 +01:00
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# #
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2019-01-02 23:24:07 +01:00
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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2019-04-05 18:47:39 +02:00
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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2018-08-31 13:36:19 +02:00
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context("deprecated.R")
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test_that("deprecated functions work", {
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2019-06-27 11:57:45 +02:00
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# first 5 chars of official name
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expect_equal(suppressWarnings(as.character(as.atc(c("nitro", "cipro")))),
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c("J01XE01", "J01MA02"))
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2018-08-31 13:36:19 +02:00
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2019-06-27 11:57:45 +02:00
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# EARS-Net
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expect_equal(suppressWarnings(as.character(as.atc("AMX"))),
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"J01CA04")
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2019-02-27 11:36:12 +01:00
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2019-06-27 11:57:45 +02:00
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expect_equal(suppressWarnings(guess_ab_col(data.frame(AMP_ND10 = "R",
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AMC_ED20 = "S"),
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as.atc("augmentin"))),
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"AMC_ED20")
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2019-09-03 09:47:39 +02:00
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expect_identical(suppressWarnings(p.symbol(seq(0, 1, 0.001))),
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p_symbol(seq(0, 1, 0.001)))
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2018-08-31 13:36:19 +02:00
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})
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