AMR/R/misc.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# AUTHORS #
# Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# LICENCE #
# This program is free software; you can redistribute it and/or modify #
# it under the terms of the GNU General Public License version 2.0, #
# as published by the Free Software Foundation. #
# #
# This program is distributed in the hope that it will be useful, #
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
# GNU General Public License for more details. #
# ==================================================================== #
# No export, no Rd
"%like%" <- function(vector, pattern) {
# Source: https://github.com/Rdatatable/data.table/blob/master/R/like.R
# But made it case insensitive
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if (is.factor(vector)) {
as.integer(vector) %in% grep(pattern, levels(vector), ignore.case = TRUE)
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} else {
grepl(pattern, vector, ignore.case = TRUE)
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}
}
# No export, no Rd
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percent <- function(x, round = 1, ...) {
base::paste0(base::round(x * 100, digits = round), "%")
}
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# No export, no Rd
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quasiquotate <- function(deparsed, parsed) {
# when text: remove first and last "
if (any(deparsed %like% '^".+"$' | deparsed %like% "^'.+'$")) {
deparsed <- deparsed %>% substr(2, nchar(.) - 1)
}
# apply if needed
if (any(!deparsed %like% '[[$:()]'
& !deparsed %in% c('""', "''", "", # empty text
".", ".data", # dplyr references
"TRUE", "FALSE", # logicals
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"NA", "NaN", "NULL", # empty values
ls(.GlobalEnv)))) {
deparsed
} else {
parsed
}
}