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<p>EUCAST breakpoints used in this package are based on the dosages in this data set. They can be retrieved with <code><ahref="eucast_rules.html">eucast_dosage()</a></code>.</p>
<p>A <ahref="https://rdrr.io/r/base/data.frame.html"class="external-link">data.frame</a> with 169 observations and 9 variables:</p><ul><li><p><code>ab</code><br> Antibiotic ID as used in this package (such as <code>AMC</code>), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available</p></li>
<li><p><code>name</code><br> Official name of the antimicrobial agent as used by WHONET/EARS-Net or the WHO</p></li>
<li><p><code>type</code><br> Type of the dosage, either "high_dosage", "standard_dosage" or "uncomplicated_uti"</p></li>
<li><p><code>dose</code><br> Dose, such as "2 g" or "25 mg/kg"</p></li>
<li><p><code>dose_times</code><br> Number of times a dose must be administered</p></li>
<li><p><code>administration</code><br> Route of administration, either "im", "iv" or "oral"</p></li>
<p><ahref="https://www.eucast.org/clinical_breakpoints/"class="external-link">'EUCAST Clinical Breakpoint Tables' v11.0</a> (2021) are based on the dosages in this data set.</p>
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<h2id="reference-data-publicly-available">Reference Data Publicly Available<aclass="anchor"aria-label="anchor"href="#reference-data-publicly-available"></a></h2>
<p>All reference data sets (about microorganisms, antibiotics, R/SI interpretation, EUCAST rules, etc.) in this <code>AMR</code> package are publicly and freely available. We continually export our data sets to formats for use in R, SPSS, SAS, Stata and Excel. We also supply flat files that are machine-readable and suitable for input in any software program, such as laboratory information systems. Please find <ahref="https://msberends.github.io/AMR/articles/datasets.html">all download links on our website</a>, which is automatically updated with every code change.</p>
<spanclass="r-out co"><spanclass="r-pr">#></span> 1 25-30 mg/kg x 1 iv 11</span>
<spanclass="r-out co"><spanclass="r-pr">#></span> 2 2 g x 6 iv 11</span>
<spanclass="r-out co"><spanclass="r-pr">#></span> 3 1 g x 3-4 iv 11</span>
<spanclass="r-out co"><spanclass="r-pr">#></span> 4 0.75-1 g x 3 oral 11</span>
<spanclass="r-out co"><spanclass="r-pr">#></span> 5 0.5 g x 3 oral 11</span>
<spanclass="r-out co"><spanclass="r-pr">#></span> 6 0.5 g x 3 oral 11</span>
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<p></p><p><code>AMR</code> (for R). Developed at the <atarget="_blank"href="https://www.rug.nl"class="external-link">University of Groningen</a> in collaboration with non-profit organisations<br><atarget="_blank"href="https://www.certe.nl"class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <atarget="_blank"href="https://www.umcg.nl"class="external-link">University Medical Center Groningen</a>.</p>
