2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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2019-01-02 23:24:07 +01:00
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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2018-12-16 22:45:12 +01:00
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# #
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# LICENCE #
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2019-01-02 23:24:07 +01:00
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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2018-12-16 22:45:12 +01:00
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# #
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2019-01-02 23:24:07 +01:00
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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2019-04-05 18:47:39 +02:00
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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2018-08-13 11:00:53 +02:00
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context("abname.R")
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test_that("abname works", {
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expect_equal(abname("AMOX"), "Amoxicillin")
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expect_equal(abname(c("AMOX", "GENT")), c("Amoxicillin", "Gentamicin"))
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expect_equal(abname(c("AMOX+GENT")), "Amoxicillin + gentamicin")
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expect_equal(abname("AMOX", from = 'umcg'), "Amoxicillin")
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2018-08-25 22:01:14 +02:00
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expect_equal(abname("amox", from = 'certe', tolower = TRUE), "amoxicillin")
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2018-08-13 11:00:53 +02:00
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expect_equal(abname("J01CA04", from = 'atc'), "Amoxicillin")
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expect_equal(abname(c("amox", "J01CA04", "Trimox", "dispermox", "Amoxil")),
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rep("Amoxicillin", 5))
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expect_equal(abname("AMOX", to = 'atc'), "J01CA04")
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expect_error(abname("AMOX", to = c(1:3)))
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expect_error(abname("AMOX", to = "test"))
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2018-10-22 12:32:59 +02:00
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expect_warning(abname("NOTEXISTING
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2018-08-13 11:00:53 +02:00
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"))
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expect_warning(abname("AMOX or GENT"))
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2018-10-22 12:32:59 +02:00
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# this one is being found with as.atc internally
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expect_equal(abname("flu_clox123"), "Flucloxacillin")
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2018-08-13 11:00:53 +02:00
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})
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