AMR/DESCRIPTION

Package: AMR
Version: 0.2.0.9022
Date: 2018-08-10
Title: Antimicrobial Resistance Analysis
Authors@R: c(
    person(
        given = c("Matthijs", "S."),
        family = "Berends",
        email = "m.s.berends@umcg.nl",
        role = c("aut", "dis", "cre"),
        comment = c(ORCID = "0000-0001-7620-1800")),
    person(
        given = c("Christian", "F."),
        family = "Luz",
        email = "c.f.luz@umcg.nl",
        role = c("aut", "dis"),
        comment = c(ORCID = "0000-0001-5809-5995")),
    person(
        given = c("Erwin", "E.A."),
        family = "Hassing",
        email = "e.hassing@certe.nl",
        role = "ctb"),
    person(
        given = "Corinna",
        family = "Glasner",
        email = "c.glasner@umcg.nl",
        role = "ths",
        comment = c(ORCID = "0000-0003-1241-1328")),
    person(
        given = c("Alex", "W."),
        family = "Friedrich",
        email = "alex.friedrich@umcg.nl",
        role = c("ths", "ldr"),
        comment = c(ORCID = "0000-0003-4881-038X")),
    person(
        given = "Bhanu",
        family = "Sinha",
        email = "b.sinha@umcg.nl",
        role = "ths",
        comment = c(ORCID = "0000-0003-1634-0010")),
    person(
        family = "University of Groningen",
        role = "uvp"))
Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)
    of microbial isolates, by using new S3 classes and applying EUCAST expert rules
    on antibiograms according to Leclercq (2013)
    <doi:10.1111/j.1469-0691.2011.03703.x>.
Depends:
    R (>= 3.0.0)
Imports:
    backports,
    clipr,
    curl,
    dplyr (>= 0.7.0),
    xml2 (>= 1.0.0),
    knitr (>= 1.0.0),
    Rcpp (>= 0.12.14),
    readr,
    rvest (>= 0.3.2),
    tibble
Suggests:
    testthat (>= 1.0.2),
    covr (>= 3.0.1),
    rmarkdown,
    rstudioapi,
    tidyr,
    ggplot2
LinkingTo: Rcpp
VignetteBuilder: knitr
URL: https://github.com/msberends/AMR
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1.9000
first commit 2018-02-21 11:52:31 +01:00			`Package: AMR`
new portion functions 2018-08-10 15:01:05 +02:00			`Version: 0.2.0.9022`
			`Date: 2018-08-10`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`Title: Antimicrobial Resistance Analysis`
first commit 2018-02-21 11:52:31 +01:00			`Authors@R: c(`
			`person(`
			`given = c("Matthijs", "S."),`
			`family = "Berends",`
			`email = "m.s.berends@umcg.nl",`
thesis advisors 2018-08-03 09:59:39 +02:00			`role = c("aut", "dis", "cre"),`
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive 2018-03-19 12:43:22 +01:00			`comment = c(ORCID = "0000-0001-7620-1800")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Christian", "F."),`
			`family = "Luz",`
			`email = "c.f.luz@umcg.nl",`
thesis advisors 2018-08-03 09:59:39 +02:00			`role = c("aut", "dis"),`
Add ORCID identifier 2018-03-19 10:28:35 +01:00			`comment = c(ORCID = "0000-0001-5809-5995")),`
first commit 2018-02-21 11:52:31 +01:00			`person(`
			`given = c("Erwin", "E.A."),`
			`family = "Hassing",`
			`email = "e.hassing@certe.nl",`
thesis advisors 2018-08-03 09:59:39 +02:00			`role = "ctb"),`
			`person(`
			`given = "Corinna",`
			`family = "Glasner",`
			`email = "c.glasner@umcg.nl",`
			`role = "ths",`
			`comment = c(ORCID = "0000-0003-1241-1328")),`
			`person(`
			`given = c("Alex", "W."),`
			`family = "Friedrich",`
			`email = "alex.friedrich@umcg.nl",`
			`role = c("ths", "ldr"),`
			`comment = c(ORCID = "0000-0003-4881-038X")),`
			`person(`
			`given = "Bhanu",`
			`family = "Sinha",`
			`email = "b.sinha@umcg.nl",`
			`role = "ths",`
			`comment = c(ORCID = "0000-0003-1634-0010")),`
			`person(`
			`family = "University of Groningen",`
			`role = "uvp"))`
first commit 2018-02-21 11:52:31 +01:00			`Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)`
First CRAN submission edits 2018-02-22 20:48:48 +01:00			`of microbial isolates, by using new S3 classes and applying EUCAST expert rules`
			`on antibiograms according to Leclercq (2013)`
			`<doi:10.1111/j.1469-0691.2011.03703.x>.`
update dependencies 2018-04-02 16:05:09 +02:00			`Depends:`
Try to support older R versions 2018-04-19 14:10:57 +02:00			`R (>= 3.0.0)`
update dependencies 2018-04-02 16:05:09 +02:00			`Imports:`
Try to support older R versions 2018-04-19 14:10:57 +02:00			`backports,`
add clipboard functions again 2018-06-27 15:54:56 +02:00			`clipr,`
atc_groups 2018-06-19 10:05:38 +02:00			`curl,`
update dependencies 2018-04-02 16:05:09 +02:00			`dplyr (>= 0.7.0),`
			`xml2 (>= 1.0.0),`
MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00			`knitr (>= 1.0.0),`
support older mac release 2018-07-13 19:40:50 +02:00			`Rcpp (>= 0.12.14),`
add clipboard functions again 2018-06-27 15:54:56 +02:00			`readr,`
MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00			`rvest (>= 0.3.2),`
			`tibble`
update dependencies 2018-04-02 16:05:09 +02:00			`Suggests:`
testthat for macOS 2018-04-02 16:21:03 +02:00			`testthat (>= 1.0.2),`
added vignette of freq 2018-05-09 11:44:46 +02:00			`covr (>= 3.0.1),`
addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00			`rmarkdown,`
freq: support for table 2018-07-09 14:02:58 +02:00			`rstudioapi,`
improvement for forecasting resistance 2018-07-26 16:30:42 +02:00			`tidyr,`
			`ggplot2`
Welcome C++! 2018-07-13 17:23:46 +02:00			`LinkingTo: Rcpp`
added vignette of freq 2018-05-09 11:44:46 +02:00			`VignetteBuilder: knitr`
update dependencies 2018-04-02 16:05:09 +02:00			`URL: https://github.com/msberends/AMR`
first commit 2018-02-21 11:52:31 +01:00			`BugReports: https://github.com/msberends/AMR/issues`
			`License: GPL-2 \| file LICENSE`
			`Encoding: UTF-8`
			`LazyData: true`
			`RoxygenNote: 6.0.1.9000`