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< a class = "navbar-link" href = "index.html" > AMR (for R)< / a >
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< a href = "#amr-for-r" class = "anchor" > < / a > < code > AMR< / code > (for R) < img src = "reference/figures/logo.png" align = "right" height = "120px" >
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< p > < em > (< help title = "Too Long, Didn't Read" > TLDR< / help > - to find out how to conduct AMR analysis, please < a href = "./articles/AMR.html" > continue reading here to get started< / a > .< / em > < / p >
< hr >
< p > < code > AMR< / code > is a free and open-source < a href = "https://www.r-project.org" > R package< / a > to simplify the analysis and prediction of < strong > Antimicrobial Resistance (AMR)< / strong > and to work with antibiotic properties by using evidence-based methods.< / p >
< p > We created this package for academic research at the Faculty of Medical Sciences of the University of Groningen and the Medical Microbiology & Infection Prevention (MMBI) department of the University Medical Center Groningen (UMCG). We released this under the GNU General Public Licence v2.0 (GPL-2) which makes it free for everybody to use and distribute, for personal and commercial use, but it may < strong > not< / strong > be used for patent purposes. Read further about our GPL-2 licence < a href = "./LICENSE-text.html" > here< / a > .< / p >
< p > This package is ready-to-use for a professional environment by specialists in the following fields:< / p >
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< p > Medical Microbiology:< / p >
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< ul >
< li > Epidemiologists (both clinical microbiological and research)< / li >
< li > Research Microbiologists< / li >
< li > Biomedical Researchers< / li >
< li > Research Pharmacologists< / li >
< / ul >
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< p > Veterinary Microbiology:< / p >
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< ul >
< li > Research Veterinarians< / li >
< li > Veterinary Epidemiologists< / li >
< li > Biomedical Researchers< / li >
< / ul >
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< p > Microbial Ecology:< / p >
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< ul >
< li > Soil Microbiologists< / li >
< li > Extremophile Researchers< / li >
< li > Astrobiologists< / li >
< / ul >
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< p > Other specialists in any of the above fields:< / p >
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< ul >
< li > Data Scientists/Data Analysts< / li >
< li > Biotechnologists< / li >
< li > Biochemists< / li >
< li > Geneticists< / li >
< li > Molecular Biologists/Microbiologists< / li >
< / ul >
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< p > Developers:< / p >
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< li > Package developers for R< / li >
< li > Software developers< / li >
< li > Web application developers< / li >
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< a href = "#get-this-package" class = "anchor" > < / a > Get this package< / h3 >
< p > This package is available on the official R network. Install this package in R with:< / p >
< div class = "sourceCode" id = "cb1" > < pre class = "sourceCode r" > < code class = "sourceCode r" > < a class = "sourceLine" id = "cb1-1" data-line-number = "1" > < span class = "kw" > < a href = "https://www.rdocumentation.org/packages/utils/topics/install.packages" > install.packages< / a > < / span > (< span class = "st" > "AMR"< / span > )< / a > < / code > < / pre > < / div >
< p > It will be downloaded and installed automatically.< / p >
< / div >
< div id = "get-started" class = "section level3" >
< h3 class = "hasAnchor" >
< a href = "#get-started" class = "anchor" > < / a > Get started< / h3 >
< p > To find out how to conduct AMR analysis, please < a href = "./articles/AMR.html" > continue reading here to get started< / a > or click the button ‘ ’ < / p >
< hr >
< p > < a href = "https://www.rug.nl" > < img src = "./logo_rug.png" height = "60px" > < / a > < a href = "https://www.umcg.nl" > < img src = "./logo_umcg.png" height = "60px" > < / a > < a href = "https://www.certe.nl" > < img src = "./logo_certe.png" height = "60px" > < / a > < a href = "http://www.eurhealth-1health.eu" > < img src = "./logo_eh1h.png" height = "60px" > < / a > < a href = "http://www.eurhealth-1health.eu" > < img src = "./logo_interreg.png" height = "60px" > < / a > < / p >
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< h2 > Links< / h2 >
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< li > Download from CRAN at < br > < a href = "https://cloud.r-project.org/package=AMR" > https:// < / a >
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< li > Report a bug at < br > < a href = "https://gitlab.com/msberends/AMR/issues" > https:// < / a >
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< a href = "https://www.r-project.org/Licenses/GPL-2" > GPL-2< / a > | file < a href = "LICENSE-text.html" > LICENSE< / a >
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< h2 > Developers< / h2 >
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< a href = "https://www.rug.nl/staff/m.s.berends/" > Matthijs S. Berends< / a > < br > < small class = "roles" > Author, maintainer < / small > < a href = "https://orcid.org/0000-0001-7620-1800" target = "orcid.widget" > < img src = "https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class = "orcid" alt = "ORCID" height = "16" > < / a > < / li >
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< a href = "https://www.rug.nl/staff/c.f.luz/" > Christian F. Luz< / a > < br > < small class = "roles" > Author, reviewer < / small > < a href = "https://orcid.org/0000-0001-5809-5995" target = "orcid.widget" > < img src = "https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class = "orcid" alt = "ORCID" height = "16" > < / a > < / li >
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< a href = "https://www.rug.nl/staff/c.glasner/" > Corinna Glasner< / a > < br > < small class = "roles" > Author, thesis advisor < / small > < a href = "https://orcid.org/0000-0003-1241-1328" target = "orcid.widget" > < img src = "https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class = "orcid" alt = "ORCID" height = "16" > < / a > < / li >
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< a href = "https://www.rug.nl/staff/a.w.friedrich/" > Alex W. Friedrich< / a > < br > < small class = "roles" > Author, thesis advisor < / small > < a href = "https://orcid.org/0000-0003-4881-038X" target = "orcid.widget" > < img src = "https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class = "orcid" alt = "ORCID" height = "16" > < / a > < / li >
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< a href = "https://www.rug.nl/staff/b.sinha/" > Bhanu N. M. Sinha< / a > < br > < small class = "roles" > Author, thesis advisor < / small > < a href = "https://orcid.org/0000-0003-1634-0010" target = "orcid.widget" > < img src = "https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class = "orcid" alt = "ORCID" height = "16" > < / a > < / li >
< li > < a href = "authors.html" > All authors...< / a > < / li >
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< p > Developed by < a href = "https://www.rug.nl/staff/m.s.berends/" > Matthijs S. Berends< / a > , < a href = "https://www.rug.nl/staff/c.f.luz/" > Christian F. Luz< / a > , < a href = "https://www.rug.nl/staff/c.glasner/" > Corinna Glasner< / a > , < a href = "https://www.rug.nl/staff/a.w.friedrich/" > Alex W. Friedrich< / a > , < a href = "https://www.rug.nl/staff/b.sinha/" > Bhanu N. M. Sinha< / a > .< / p >
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