AMR/man/microorganisms.Rd

32 lines
1.4 KiB
Plaintext
Raw Normal View History

2018-02-21 11:52:31 +01:00
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{microorganisms}
\alias{microorganisms}
2018-09-01 21:19:46 +02:00
\title{Data set with human pathogenic microorganisms}
\format{A \code{\link{tibble}} with 2,664 observations and 12 variables:
2018-02-21 11:52:31 +01:00
\describe{
2018-08-31 13:36:19 +02:00
\item{\code{mo}}{ID of microorganism}
2018-02-21 11:52:31 +01:00
\item{\code{bactsys}}{Bactsyscode of microorganism}
\item{\code{family}}{Family name of microorganism}
\item{\code{genus}}{Genus name of microorganism, like \code{"Echerichia"}}
\item{\code{species}}{Species name of microorganism, like \code{"coli"}}
\item{\code{subspecies}}{Subspecies name of bio-/serovar of microorganism, like \code{"EHEC"}}
\item{\code{fullname}}{Full name, like \code{"Echerichia coli (EHEC)"}}
\item{\code{type}}{Type of microorganism, like \code{"Bacteria"} and \code{"Fungus/yeast"}}
\item{\code{gramstain}}{Gram of microorganism, like \code{"Negative rods"}}
\item{\code{aerobic}}{Logical whether bacteria is aerobic}
\item{\code{type_nl}}{Type of microorganism in Dutch, like \code{"Bacterie"} and \code{"Schimmel/gist"}}
\item{\code{gramstain_nl}}{Gram of microorganism in Dutch, like \code{"Negatieve staven"}}
2018-02-21 11:52:31 +01:00
}}
\usage{
microorganisms
2018-02-21 11:52:31 +01:00
}
\description{
2018-09-01 21:19:46 +02:00
A data set containing 2,664 (potential) human pathogenic microorganisms. MO codes can be looked up using \code{\link{guess_mo}}.
2018-02-21 11:52:31 +01:00
}
\seealso{
2018-08-31 13:36:19 +02:00
\code{\link{guess_mo}} \code{\link{antibiotics}} \code{\link{microorganisms.umcg}}
2018-02-21 11:52:31 +01:00
}
\keyword{datasets}