2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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# TITLE #
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# Antimicrobial Resistance (AMR) Analysis #
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# #
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2019-01-02 23:24:07 +01:00
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# SOURCE #
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# https://gitlab.com/msberends/AMR #
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2018-12-16 22:45:12 +01:00
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# #
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# LICENCE #
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2019-01-02 23:24:07 +01:00
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# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
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2018-12-16 22:45:12 +01:00
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# #
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2019-01-02 23:24:07 +01:00
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# This R package is free software; you can freely use and distribute #
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# it for both personal and commercial purposes under the terms of the #
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# GNU General Public License version 2.0 (GNU GPL-2), as published by #
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# the Free Software Foundation. #
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# #
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# This R package was created for academic research and was publicly #
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# released in the hope that it will be useful, but it comes WITHOUT #
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# ANY WARRANTY OR LIABILITY. #
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2019-04-05 18:47:39 +02:00
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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2018-12-16 22:45:12 +01:00
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# ==================================================================== #
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2018-07-23 10:35:39 +02:00
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context("key_antibiotics.R")
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test_that("keyantibiotics work", {
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2019-08-27 16:45:42 +02:00
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expect_equal(length(key_antibiotics(example_isolates, warnings = FALSE)), nrow(example_isolates))
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expect_false(all(is.na(key_antibiotics(example_isolates))))
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2018-07-23 10:35:39 +02:00
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expect_true(key_antibiotics_equal("SSS", "SSS"))
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expect_false(key_antibiotics_equal("SSS", "SRS"))
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expect_true(key_antibiotics_equal("SSS", "SIS", ignore_I = TRUE))
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expect_false(key_antibiotics_equal("SSS", "SIS", ignore_I = FALSE))
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expect_true(key_antibiotics_equal(".SS", "SI.", ignore_I = TRUE))
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expect_false(key_antibiotics_equal(".SS", "SI.", ignore_I = FALSE))
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2019-09-12 15:08:53 +02:00
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library(dplyr)
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expect_warning(key_antibiotics(example_isolates %>% slice(rep(1, 10))))
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2018-07-23 10:35:39 +02:00
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})
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