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(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Articles • AMR (for R)</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><script src="../extra.js"></script><meta property="og:title" content="Articles"><meta property="og:image" content="https://msberends.github.io/AMR/logo.svg"><meta name="twitter:card" content="summary_large_image"><meta name="twitter:creator" content="@msberends"><meta name="twitter:site" content="@univgroningen"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
gitlab pages
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(v1.7.1.9058) vars selection for set_ab_names()
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<![endif]--></head><body data-spy="scroll" data-target="#toc">
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
gitlab pages
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<div class="container template-article-index">
(v1.7.1.9058) vars selection for set_ab_names()
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<header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
gitlab pages
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<div class="container">
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new website, freq updates
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
(v1.7.1.9070) Better WHONET support
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9070</span>
gitlab pages
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(v1.7.1.9058) vars selection for set_ab_names()
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gitlab pages
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<a href="../index.html">
(v1.7.1.9009) fix for ab class selectors
2021-07-03 21:56:53 +02:00
<span class="fa fa-home"></span>
new website, freq updates
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Home
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big website update, licence txt update
2019-01-02 23:24:07 +01:00
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<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-question-circle"></span>
big website update, licence txt update
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How to
gitlab pages
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big website update, licence txt update
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<span class="caret"></span>
gitlab pages
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(v1.7.1.9058) vars selection for set_ab_names()
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<ul class="dropdown-menu" role="menu"><li>
big website update, licence txt update
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<a href="../articles/AMR.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-directions"></span>
big website update, licence txt update
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Conduct AMR analysis
</a>
</li>
<li>
resistance predict update
2019-02-11 10:27:10 +01:00
<a href="../articles/resistance_predict.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-dice"></span>
big website update, licence txt update
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Predict antimicrobial resistance
</a>
</li>
(v1.3.0.9004) data sets, as.disk() improvement
2020-08-16 21:38:42 +02:00
<li>
<a href="../articles/datasets.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-database"></span>
(v1.3.0.9004) data sets, as.disk() improvement
2020-08-16 21:38:42 +02:00
(v1.3.0.9014) as.mo() speed improvement
2020-09-03 12:31:48 +02:00
Data sets for download / own use
(v1.3.0.9004) data sets, as.disk() improvement
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</a>
</li>
(v1.0.1.9000) first PCA implementation
2020-03-07 21:48:21 +01:00
<li>
<a href="../articles/PCA.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-compress"></span>
(v1.0.1.9000) first PCA implementation
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Conduct principal component analysis for AMR
</a>
</li>
added mdr_tb()
2019-05-23 16:58:59 +02:00
<li>
<a href="../articles/MDR.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-skull-crossbones"></span>
added mdr_tb()
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Determine multi-drug resistance (MDR)
</a>
</li>
WHONET/EARS-Net support
2019-01-29 00:06:50 +01:00
<li>
<a href="../articles/WHONET.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-globe-americas"></span>
WHONET/EARS-Net support
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Work with WHONET data
</a>
</li>
SPSS tutorial
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<li>
<a href="../articles/SPSS.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-file-upload"></span>
SPSS tutorial
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Import data from SPSS/SAS/Stata
</a>
</li>
big website update, licence txt update
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<li>
<a href="../articles/EUCAST.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-exchange-alt"></span>
big website update, licence txt update
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Apply EUCAST rules
</a>
</li>
<li>
resistance predict update
2019-02-11 10:27:10 +01:00
<a href="../reference/mo_property.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-bug"></span>
big website update, licence txt update
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Get properties of a microorganism
</a>
</li>
<li>
new antibiotics
2019-05-10 16:44:59 +02:00
<a href="../reference/ab_property.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-capsules"></span>
big website update, licence txt update
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Get properties of an antibiotic
</a>
</li>
guess_ab_col, benchmarks
2019-01-11 20:37:23 +01:00
<li>
<a href="../articles/benchmarks.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-shipping-fast"></span>
guess_ab_col, benchmarks
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Other: benchmarks
</a>
</li>
(v1.7.1.9058) vars selection for set_ab_names()
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</ul></li>
gitlab pages
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<li>
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
<a href="../reference/index.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-book-open"></span>
new website, freq updates
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Manual
</a>
gitlab pages
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<li>
new website, freq updates
2018-12-29 22:24:19 +01:00
<a href="../authors.html">
(v1.7.1.9009) fix for ab class selectors
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<span class="fa fa-users"></span>
new website, freq updates
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Authors
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gitlab pages
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new website, freq updates
2018-12-29 22:24:19 +01:00
<li>
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
<a href="../news/index.html">
(v1.6.0.9013) website update
2021-04-29 17:16:30 +02:00
<span class="far fa-newspaper"></span>
gitlab pages
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new website, freq updates
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Changelog
gitlab pages
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</a>
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(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
</ul><ul class="nav navbar-nav navbar-right"><li>
<a href="https://github.com/msberends/AMR" class="external-link">
(v1.6.0.9013) website update
2021-04-29 17:16:30 +02:00
<span class="fab fa-github"></span>
new website, freq updates
2018-12-29 22:24:19 +01:00
Source Code
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(v1.7.1.9058) vars selection for set_ab_names()
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</ul></div><!--/.nav-collapse -->
gitlab pages
2018-12-23 21:26:21 +01:00
</div><!--/.container -->
</div><!--/.navbar -->
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
</header><div class="row">
gitlab pages
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<div class="col-md-9 contents">
<div class="page-header">
<h1>Articles</h1>
</div>
<div class="section ">
<h3>All vignettes</h3>
<p class="section-desc"></p>
(v1.7.1.9058) vars selection for set_ab_names()
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<dl><dt><a href="AMR.html">How to conduct AMR data analysis</a></dt>
<dd>
</dd><dt><a href="EUCAST.html">How to apply EUCAST rules</a></dt>
<dd>
</dd><dt><a href="MDR.html">How to determine multi-drug resistance (MDR)</a></dt>
<dd>
</dd><dt><a href="PCA.html">How to conduct principal component analysis (PCA) for AMR</a></dt>
<dd>
</dd><dt><a href="SPSS.html">How to import data from SPSS / SAS / Stata</a></dt>
<dd>
</dd><dt><a href="WHONET.html">How to work with WHONET data</a></dt>
<dd>
</dd><dt><a href="benchmarks.html">Benchmarks</a></dt>
<dd>
</dd><dt><a href="datasets.html">Data sets for download / own use</a></dt>
<dd>
</dd><dt><a href="resistance_predict.html">How to predict antimicrobial resistance</a></dt>
<dd>
</dd><dt><a href="welcome_to_AMR.html">Welcome to the `AMR` package</a></dt>
<dd>
</dd></dl></div>
gitlab pages
2018-12-23 21:26:21 +01:00
</div>
</div>
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
(v1.7.1.9058) vars selection for set_ab_names()
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<footer><div class="copyright">
(v1.7.1.9062) website update
2021-12-06 11:12:30 +01:00
<p></p><p>Developed by Matthijs S. Berends, Christian F. Luz, Dennis Souverein, Erwin E. A. Hassing.</p>
gitlab pages
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</div>
<div class="pkgdown">
(v1.7.1.9058) vars selection for set_ab_names()
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.0.</p>
gitlab pages
2018-12-23 21:26:21 +01:00
</div>
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
</footer></div>
gitlab pages
2018-12-23 21:26:21 +01:00
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
gitlab pages
2018-12-23 21:26:21 +01:00
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
</body></html>
(v0.7.1.9088) bug_drug improvement
2019-09-25 15:43:22 +02:00