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< h1 > Data set with ~500 antibiotics< / h1 >
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< div class = "hidden name" > < code > antibiotics.Rd< / code > < / div >
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< p > A data set containing all antibiotics with a J0 code and some other antimicrobial agents, with their DDDs. Except for trade names and abbreviations, all properties were downloaded from the WHO, see Source.< / p >
< / div >
< pre class = "usage" > < span class = 'no' > antibiotics< / span > < / pre >
< h2 class = "hasAnchor" id = "format" > < a class = "anchor" href = "#format" > < / a > Format< / h2 >
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< p > A < code > < a href = 'https://www.rdocumentation.org/packages/base/topics/data.frame' > data.frame< / a > < / code > with 488 observations and 17 variables:< / p > < dl class = 'dl-horizontal' >
< dt > < code > atc< / code > < / dt > < dd > < p > ATC code (Anatomical Therapeutic Chemical), like < code > J01CR02< / code > < / p > < / dd >
< dt > < code > ears_net< / code > < / dt > < dd > < p > EARS-Net code (European Antimicrobial Resistance Surveillance Network), like < code > AMC< / code > < / p > < / dd >
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< dt > < code > certe< / code > < / dt > < dd > < p > Certe code, like < code > amcl< / code > < / p > < / dd >
< dt > < code > umcg< / code > < / dt > < dd > < p > UMCG code, like < code > AMCL< / code > < / p > < / dd >
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< dt > < code > abbr< / code > < / dt > < dd > < p > Abbreviation as used by many countries, used internally by < code > < a href = 'as.atc.html' > as.atc< / a > < / code > < / p > < / dd >
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< dt > < code > official< / code > < / dt > < dd > < p > Official name by the WHO, like < code > "Amoxicillin and beta-lactamase inhibitor"< / code > < / p > < / dd >
< dt > < code > official_nl< / code > < / dt > < dd > < p > Official name in the Netherlands, like < code > "Amoxicilline met enzymremmer"< / code > < / p > < / dd >
< dt > < code > trivial_nl< / code > < / dt > < dd > < p > Trivial name in Dutch, like < code > "Amoxicilline/clavulaanzuur"< / code > < / p > < / dd >
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< dt > < code > trade_name< / code > < / dt > < dd > < p > Trade name as used by many countries (a total of 294), used internally by < code > < a href = 'as.atc.html' > as.atc< / a > < / code > < / p > < / dd >
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< dt > < code > oral_ddd< / code > < / dt > < dd > < p > Defined Daily Dose (DDD), oral treatment< / p > < / dd >
< dt > < code > oral_units< / code > < / dt > < dd > < p > Units of < code > ddd_units< / code > < / p > < / dd >
< dt > < code > iv_ddd< / code > < / dt > < dd > < p > Defined Daily Dose (DDD), parenteral treatment< / p > < / dd >
< dt > < code > iv_units< / code > < / dt > < dd > < p > Units of < code > iv_ddd< / code > < / p > < / dd >
< dt > < code > atc_group1< / code > < / dt > < dd > < p > ATC group, like < code > "Macrolides, lincosamides and streptogramins"< / code > < / p > < / dd >
< dt > < code > atc_group2< / code > < / dt > < dd > < p > Subgroup of < code > atc_group1< / code > , like < code > "Macrolides"< / code > < / p > < / dd >
< dt > < code > useful_gramnegative< / code > < / dt > < dd > < p > < code > FALSE< / code > if not useful according to EUCAST, < code > NA< / code > otherwise (see Source)< / p > < / dd >
< dt > < code > useful_grampositive< / code > < / dt > < dd > < p > < code > FALSE< / code > if not useful according to EUCAST, < code > NA< / code > otherwise (see Source)< / p > < / dd >
< / dl >
< h2 class = "hasAnchor" id = "source" > < a class = "anchor" href = "#source" > < / a > Source< / h2 >
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< p > - World Health Organization (WHO) Collaborating Centre for Drug Statistics Methodology: < a href = 'https://www.whocc.no/atc_ddd_index/' > https://www.whocc.no/atc_ddd_index/< / a > < / p >
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< p > Table antibiotic coding EARSS (from WHONET 5.3): < a href = 'http://www.madsonline.dk/Tutorials/landskoder_antibiotika_WM.pdf' > http://www.madsonline.dk/Tutorials/landskoder_antibiotika_WM.pdf< / a > < / p >
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< p > EUCAST Expert Rules, Intrinsic Resistance and Exceptional Phenotypes Tables. Version 3.1, 2016: < a href = 'http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Expert_Rules/Expert_rules_intrinsic_exceptional_V3.1.pdf' > http://www.eucast.org/fileadmin/src/media/PDFs/EUCAST_files/Expert_Rules/Expert_rules_intrinsic_exceptional_V3.1.pdf< / a > < / p >
< p > European Commission Public Health PHARMACEUTICALS - COMMUNITY REGISTER: < a href = 'http://ec.europa.eu/health/documents/community-register/html/atc.htm' > http://ec.europa.eu/health/documents/community-register/html/atc.htm< / a > < / p >
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On our website < a href = 'https://msberends.gitlab.io/AMR' > https://msberends.gitlab.io/AMR< / a > you can find < a href = 'https://msberends.gitlab.io/AMR/articles/AMR.html' > a omprehensive tutorial< / a > about how to conduct AMR analysis and find < a href = 'https://msberends.gitlab.io/AMR/reference' > the complete documentation of all functions< / a > , which reads a lot easier than in R.< / p >
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< p > Developed by < a href = 'https://www.rug.nl/staff/m.s.berends/' > Matthijs S. Berends< / a > , < a href = 'https://www.rug.nl/staff/c.f.luz/' > Christian F. Luz< / a > , < a href = 'https://www.rug.nl/staff/c.glasner/' > Corinna Glasner< / a > , < a href = 'https://www.rug.nl/staff/a.w.friedrich/' > Alex W. Friedrich< / a > , < a href = 'https://www.rug.nl/staff/b.sinha/' > Bhanu N. M. Sinha< / a > .< / p >
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