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first commit
2018-02-21 11:52:31 +01:00
Package: AMR
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
Version: 0.1.2
add tests using testthat
2018-03-27 17:43:42 +02:00
Date: 2018-03-27
First CRAN submission edits
2018-02-22 20:48:48 +01:00
Title: Antimicrobial Resistance Analysis
first commit
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Authors@R: c(
person(
given = c("Matthijs", "S."),
family = "Berends",
email = "m.s.berends@umcg.nl",
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species - Renamed `ablist` to `antibiotics` - Added support for character vector in join functions - Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7620-1800")),
first commit
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person(
given = c("Christian", "F."),
family = "Luz",
email = "c.f.luz@umcg.nl",
Add ORCID identifier
2018-03-19 10:28:35 +01:00
role = c("aut", "ctb"),
comment = c(ORCID = "0000-0001-5809-5995")),
first commit
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person(
given = c("Erwin", "E.A."),
family = "Hassing",
email = "e.hassing@certe.nl",
role = "ctb"))
Description: Functions to simplify the analysis of Antimicrobial Resistance (AMR)
First CRAN submission edits
2018-02-22 20:48:48 +01:00
of microbial isolates, by using new S3 classes and applying EUCAST expert rules
on antibiograms according to Leclercq (2013)
<doi:10.1111/j.1469-0691.2011.03703.x>.
first commit
2018-02-21 11:52:31 +01:00
Depends: R (>= 3.0)
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive - Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore) - Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS - Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
Imports: dplyr (>= 0.7.0), knitr, reshape2 (>= 1.4.0), xml2, rvest
add tests using testthat
2018-03-27 17:43:42 +02:00
Suggests: testthat
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive - Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore) - Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS - Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
URL: https://cran.r-project.org/package=AMR
first commit
2018-02-21 11:52:31 +01:00
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1.9000