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<p>These functions can be used for generating random MIC values and disk diffusion diameters, for AMR data analysis practice. By providing a microorganism and antimicrobial drug, the generated results will reflect reality as much as possible.</p>
<divclass="sourceCode"><preclass="sourceCode r"><code><span><spanclass="fu">random_mic</span><spanclass="op">(</span>size <spanclass="op">=</span><spanclass="cn">NULL</span>, mo <spanclass="op">=</span><spanclass="cn">NULL</span>, ab <spanclass="op">=</span><spanclass="cn">NULL</span>, <spanclass="va">...</span><spanclass="op">)</span></span>
<span></span>
<span><spanclass="fu">random_disk</span><spanclass="op">(</span>size <spanclass="op">=</span><spanclass="cn">NULL</span>, mo <spanclass="op">=</span><spanclass="cn">NULL</span>, ab <spanclass="op">=</span><spanclass="cn">NULL</span>, <spanclass="va">...</span><spanclass="op">)</span></span>
<dd><p>desired size of the returned vector. If used in a <ahref="https://rdrr.io/r/base/data.frame.html"class="external-link">data.frame</a> call or <code>dplyr</code> verb, will get the current (group) size if left blank.</p></dd>
<dt>mo</dt>
<dd><p>any <ahref="https://rdrr.io/r/base/character.html"class="external-link">character</a> that can be coerced to a valid microorganism code with <code><ahref="as.mo.html">as.mo()</a></code></p></dd>
<dd><p>any <ahref="https://rdrr.io/r/base/character.html"class="external-link">character</a> that can be coerced to a valid antimicrobial drug code with <code><ahref="as.ab.html">as.ab()</a></code></p></dd>
<p>class <code>mic</code> for <code>random_mic()</code> (see <code><ahref="as.mic.html">as.mic()</a></code>) and class <code>disk</code> for <code>random_disk()</code> (see <code><ahref="as.disk.html">as.disk()</a></code>)</p>
<p>The base <spanstyle="R">R</span> function <code><ahref="https://rdrr.io/r/base/sample.html"class="external-link">sample()</a></code> is used for generating values.</p>
<p>Generated values are based on the EUCAST 2024 guideline as implemented in the <ahref="clinical_breakpoints.html">clinical_breakpoints</a> data set. To create specific generated values per bug or drug, set the <code>mo</code> and/or <code>ab</code> argument.</p>
<spanclass="r-in"><span><spanclass="fu">random_mic</span><spanclass="op">(</span><spanclass="fl">25</span>, <spanclass="st">"Klebsiella pneumoniae"</span><spanclass="op">)</span><spanclass="co"># range 0.0625-64</span></span></span>
<spanclass="r-in"><span><spanclass="fu">random_disk</span><spanclass="op">(</span><spanclass="fl">25</span>, <spanclass="st">"Klebsiella pneumoniae"</span><spanclass="op">)</span><spanclass="co"># range 8-50</span></span></span>
<p><code>AMR</code> (for R). Free and open-source, licenced under the <atarget="_blank"href="https://github.com/msberends/AMR/blob/main/LICENSE"class="external-link">GNU General Public License version 2.0 (GPL-2)</a>.<br>Developed at the <atarget="_blank"href="https://www.rug.nl"class="external-link">University of Groningen</a> and <atarget="_blank"href="https://www.umcg.nl"class="external-link">University Medical Center Groningen</a> in The Netherlands.</p>
