AMR/tests/testthat/test-ggplot_rsi.R

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context("ggplot_rsi.R")
test_that("ggplot_rsi works", {
skip_if_not("ggplot2" %in% rownames(installed.packages()))
library(dplyr)
library(ggplot2)
# data should be equal
expect_equal(
(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi())$data %>%
summarise_all(portion_IR) %>% as.double(),
septic_patients %>% select(amcl, cipr) %>%
summarise_all(portion_IR) %>% as.double()
)
expect_equal(
(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Interpretation", facet = "Antibiotic"))$data %>%
summarise_all(portion_IR) %>% as.double(),
septic_patients %>% select(amcl, cipr) %>%
summarise_all(portion_IR) %>% as.double()
)
expect_equal(
(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Antibiotic", facet = "Interpretation"))$data %>%
summarise_all(portion_IR) %>% as.double(),
septic_patients %>% select(amcl, cipr) %>%
summarise_all(portion_IR) %>% as.double()
)
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expect_equal(
(septic_patients %>% select(amcl, cipr) %>% ggplot_rsi(x = "Antibiotic",
facet = "Interpretation",
fun = count_df))$data %>%
summarise_all(count_IR) %>% as.double(),
septic_patients %>% select(amcl, cipr) %>%
summarise_all(count_IR) %>% as.double()
)
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})