AMR/R/zz_deprecated.R

# ==================================================================== #
# TITLE:                                                               #
# AMR: An R Package for Working with Antimicrobial Resistance Data     #
#                                                                      #
# SOURCE CODE:                                                         #
# https://github.com/msberends/AMR                                     #
#                                                                      #
# PLEASE CITE THIS SOFTWARE AS:                                        #
# Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
# AMR: An R Package for Working with Antimicrobial Resistance Data.    #
# Journal of Statistical Software, 104(3), 1-31.                       #
# https://doi.org/10.18637/jss.v104.i03                                #
#                                                                      #
# Developed at the University of Groningen and the University Medical  #
# Center Groningen in The Netherlands, in collaboration with many      #
# colleagues from around the world, see our website.                   #
#                                                                      #
# This R package is free software; you can freely use and distribute   #
# it for both personal and commercial purposes under the terms of the  #
# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
# the Free Software Foundation.                                        #
# We created this package for both routine data analysis and academic  #
# research and it was publicly released in the hope that it will be    #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
#                                                                      #
# Visit our website for the full manual and a complete tutorial about  #
# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
# ==================================================================== #

# #' Deprecated Functions
# #' 
# #' These functions are so-called '[Deprecated]'. **They will be removed in a future release.** Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
# #' @keywords internal
# #' @name AMR-deprecated
# #' @rdname AMR-deprecated
# #' @export
# NULL

deprecation_warning <- function(old = NULL, new = NULL, extra_msg = NULL, is_function = TRUE) {
  if (is.null(old)) {
    warning_(extra_msg)
  } else {
    env <- paste0("deprecated_", old)
    if (!env %in% names(AMR_env)) {
      AMR_env[[paste0("deprecated_", old)]] <- 1
      if (isTRUE(is_function)) {
        old <- paste0(old, "()")
        new <- paste0(new, "()")
        type <- "function"
      } else {
        type <- "argument"
      }
      warning_(
        ifelse(is.null(new),
          paste0("The `", old, "` ", type, " is no longer in use"),
          paste0("The `", old, "` ", type, " has been replaced with `", new, "`")
        ),
        ifelse(type == "argument",
          ". While the old argument still works, it will be removed in a future version, so please update your code.",
          ", see `?AMR-deprecated`."
        ),
        ifelse(!is.null(extra_msg),
          paste0(" ", extra_msg),
          ""
        ),
        "\nThis warning will be shown once per session."
      )
    }
  }
}