AMR/.gitlab-ci.yml

# from https://stackoverflow.com/questions/51866926
# and https://github.com/jangorecki/r.gitlab.ci
# and https://docs.gitlab.com/ce/ci/yaml/README.html

# how the Docker+R images work: https://hub.docker.com/r/rocker/r-ver/

stages:
    - build
    - deploy

variables:
  WARNINGS_ARE_ERRORS: 1

R 3:
    image: rocker/r-ver:3 # rocker/r-base
    stage: build
    allow_failure: false
    script:
    - apt-get update
    # install dependencies for package
    - apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
    - R -e 'install.packages(c("devtools", "rlang"))'
    - R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"), repos = "https://cran.rstudio.com")'
    # remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
    - rm -rf vignettes
    - R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
    - R CMD build . --no-build-vignettes --no-manual
    - PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
    - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran
    - Rscript -e "options()" # to check for variables to circumvent testthat::skip_on_cran
    # code coverage
    - apt-get install --yes git
    - Rscript -e 'cc <- covr::package_coverage(); covr::codecov(coverage = cc, token = "50ffa0aa-fee0-4f8b-a11d-8c7edc6d32ca"); cat("Code coverage:", covr::percent_coverage(cc))'
    coverage: '/Code coverage: \d+\.\d+/'
    artifacts:
      paths:
      - '*.Rcheck\**\*.log'
      - '*.Rcheck\**\*.out'
      - '*.Rcheck\**\*.fail'
      - '*.Rcheck\**\*.Rout'
      name: 'Rcheck log'
      expire_in: '1 month'

R 3.4:
    image: rocker/r-ver:3.4 # rocker/r-base
    stage: build
    allow_failure: true
    script:
    - apt-get update
    # install dependencies for package
    - apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
    - R -e 'install.packages("devtools")'
    - R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
    # remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
    - rm -rf vignettes
    - R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
    - R CMD build . --no-build-vignettes --no-manual
    - PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
    - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran

R 3.5:
    image: rocker/r-ver:3.5 # rocker/r-base
    stage: build
    allow_failure: true
    script:
    - apt-get update
    # install dependencies for package
    - apt-get install --yes --no-install-recommends libxml2-dev libssl-dev libcurl4-openssl-dev zlib1g-dev
    - R -e 'install.packages("devtools")'
    - R -e 'devtools::install_deps(dependencies = c("Depends", "Imports", "Suggests"))'
    # remove vignettes folder and get VignetteBuilder field out of DESCRIPTION file
    - rm -rf vignettes
    - R -e 'd <- read.dcf("DESCRIPTION"); d[, colnames(d) == "VignetteBuilder"] <- NA; write.dcf(d, "DESCRIPTION")'
    - R CMD build . --no-build-vignettes --no-manual
    - PKG_FILE_NAME=$(ls -1t *.tar.gz | head -n 1)
    - R CMD check "${PKG_FILE_NAME}" --no-build-vignettes --no-manual --as-cran

coverage_job:
    # image: rocker/r-ver:3
    stage: deploy
    script:
    - ls