AMR/man/microorganisms.old.Rd

40 lines
2.2 KiB
Plaintext
Raw Normal View History

2018-09-24 23:33:29 +02:00
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{microorganisms.old}
\alias{microorganisms.old}
2019-01-25 13:18:41 +01:00
\title{Data set with previously accepted taxonomic names}
2019-04-05 18:47:39 +02:00
\format{A \code{\link{data.frame}} with 21,342 observations and 4 variables:
2018-09-24 23:33:29 +02:00
\describe{
2019-04-05 18:47:39 +02:00
\item{\code{col_id}}{Catalogue of Life ID that was originally given}
\item{\code{col_id_new}}{New Catalogue of Life ID that responds to an entry in the \code{\link{microorganisms}} data set}
\item{\code{fullname}}{Old full taxonomic name of the microorganism}
2019-02-20 00:04:48 +01:00
\item{\code{ref}}{Author(s) and year of concerning scientific publication}
2018-09-24 23:33:29 +02:00
}}
\source{
2019-06-03 17:45:22 +02:00
Catalogue of Life: Annual Checklist (public online taxonomic database), \url{http://www.catalogueoflife.org} (check included annual version with \code{\link{catalogue_of_life_version}()}).
2018-09-24 23:33:29 +02:00
}
\usage{
microorganisms.old
}
\description{
2019-02-20 00:04:48 +01:00
A data set containing old (previously valid or accepted) taxonomic names according to the Catalogue of Life. This data set is used internally by \code{\link{as.mo}}.
2018-09-24 23:33:29 +02:00
}
2019-02-20 00:04:48 +01:00
\section{Catalogue of Life}{
2018-09-24 23:33:29 +02:00
2019-02-28 13:56:28 +01:00
\if{html}{\figure{logo_col.png}{options: height=40px style=margin-bottom:5px} \cr}
2019-04-07 22:40:02 +02:00
This package contains the complete taxonomic tree of almost all microorganisms (~65,000 species) from the authoritative and comprehensive Catalogue of Life (\url{http://www.catalogueoflife.org}). The Catalogue of Life is the most comprehensive and authoritative global index of species currently available.
2018-10-01 11:39:43 +02:00
2019-02-28 13:56:28 +01:00
\link[=catalogue_of_life]{Click here} for more information about the included taxa. The Catalogue of Life releases updates annually; check which version was included in this package with \code{\link{catalogue_of_life_version}()}.
2018-09-24 23:33:29 +02:00
}
2019-01-02 23:24:07 +01:00
\section{Read more on our website!}{
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
2019-01-02 23:24:07 +01:00
}
2018-09-24 23:33:29 +02:00
\seealso{
\code{\link{as.mo}} \code{\link{mo_property}} \code{\link{microorganisms}}
}
\keyword{datasets}