AMR/man/microorganisms.umcg.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{microorganisms.umcg}
\alias{microorganisms.umcg}
\title{Translation table for UMCG}
\format{A \code{\link{data.frame}} with 1,095 observations and 2 variables:
\describe{
  \item{\code{umcg}}{Code of microorganism according to UMCG MMB}
  \item{\code{certe}}{Code of microorganism according to Certe MMB}
}}
\usage{
microorganisms.umcg
}
\description{
A data set containing all bacteria codes of UMCG MMB. These codes can be joined to data with an ID from \code{\link{microorganisms}$mo} (using \code{\link{left_join_microorganisms}}). GLIMS codes can also be translated to valid \code{MO}s with \code{\link{guess_mo}}.
}
\section{Read more on our website!}{

\if{html}{\figure{logo.png}{options: height=40px style=margin-bottom:5px} \cr}
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a omprehensive tutorial} about how to conduct AMR analysis and find \href{https://msberends.gitlab.io/AMR/reference}{the complete documentation of all functions}, which reads a lot easier than in R.
}

\seealso{
\code{\link{as.mo}} \code{\link{microorganisms.certe}} \code{\link{microorganisms}}
}
\keyword{datasets}