AMR/R/deprecated.R

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
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# SOURCE #
# https://gitlab.com/msberends/AMR #
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# #
# LICENCE #
# (c) 2018-2020 Berends MS, Luz CF et al. #
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# #
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# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# We created this package for both routine data analysis and academic #
# research and it was publicly released in the hope that it will be #
# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY. #
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# Visit our website for more info: https://msberends.gitlab.io/AMR. #
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# ==================================================================== #
#' Deprecated functions
#'
#' These functions are so-called '[Deprecated]'. They will be removed in a future release. Using the functions will give a warning with the name of the function it has been replaced by (if there is one).
#' @inheritSection lifecycle Retired lifecycle
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#' @inheritSection AMR Read more on our website!
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#' @export
#' @keywords internal
#' @name AMR-deprecated
#' @rdname AMR-deprecated
p.symbol <- function(...) {
.Deprecated("p_symbol()", package = "AMR")
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p_symbol(...)
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}
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#' @rdname AMR-deprecated
#' @export
portion_R <- function(...) {
.Deprecated("resistance()", package = "AMR")
proportion_R(...)
}
#' @rdname AMR-deprecated
#' @export
portion_IR <- function(...) {
.Deprecated("proportion_IR()", package = "AMR")
proportion_IR(...)
}
#' @rdname AMR-deprecated
#' @export
portion_I <- function(...) {
.Deprecated("proportion_I()", package = "AMR")
proportion_I(...)
}
#' @rdname AMR-deprecated
#' @export
portion_SI <- function(...) {
.Deprecated("susceptibility()", package = "AMR")
proportion_SI(...)
}
#' @rdname AMR-deprecated
#' @export
portion_S <- function(...) {
.Deprecated("proportion_S()", package = "AMR")
proportion_S(...)
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}
#' @rdname AMR-deprecated
#' @export
portion_df <- function(...) {
.Deprecated("proportion_df()", package = "AMR")
proportion_df(...)
}